Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b21
         (836 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ370040-1|ABD18601.1|  121|Anopheles gambiae putative TIL domai...    27   0.53 
AY745233-1|AAU93512.1|  100|Anopheles gambiae SOD3B protein.           25   3.8  
AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.           23   8.7  

>DQ370040-1|ABD18601.1|  121|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 121

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 25/81 (30%), Positives = 37/81 (45%)
 Frame = -1

Query: 671 SGRATVPPNLLAVHPCALLP*IYFFIDYLNVPINGVNVHDIIGYKFDYGPVARSPRAGRS 492
           +GR TV  N + V  C +   I  F+  L  P + +  +D      D GP A   R   +
Sbjct: 26  TGRKTVRKNAVFVCDCVVT--IIVFLSRLKGP-DTIVCYDPNEVYDDCGP-ACGDRTCTN 81

Query: 491 EREHGAGDDAGCHRSCGPKLF 429
           +R++    D+ C RSC P  F
Sbjct: 82  QRKN----DSACRRSCNPGCF 98


>AY745233-1|AAU93512.1|  100|Anopheles gambiae SOD3B protein.
          Length = 100

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 485 EHGAGDDAGCH 453
           +HGA DDA CH
Sbjct: 7   DHGAPDDANCH 17


>AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.
          Length = 165

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 715 SKSKYDIRNRLHAADPPKMAPPLNKSPAHAN 807
           S S YD   R HA   P  APP   SPA+++
Sbjct: 55  SSSLYDRVPREHATSSPYHAPP---SPANSH 82


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 895,802
Number of Sequences: 2352
Number of extensions: 18153
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88478514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)