Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b21
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical pr...    35   0.062
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    33   0.25 
Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical pr...    29   5.4  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AF273829-1|AAG15178.1|  372|Caenorhabditis elegans nuclear recep...    28   9.5  
AC024776-16|AAL32242.1|  363|Caenorhabditis elegans Nuclear horm...    28   9.5  

>Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical
           protein B0198.1 protein.
          Length = 279

 Score = 35.1 bits (77), Expect = 0.062
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 19/116 (16%)
 Frame = -2

Query: 493 LNASMAQAMMLDA-IDPAVRSSFAAMQLELKCCGVNSNLDWYK---------------HR 362
           LNAS+   ++ +  +DP +  +   +Q + KCCG N+  DW K                R
Sbjct: 128 LNASLPNDILNNYNLDPNIAKAVNYLQRDSKCCGSNAFNDWPKPEVEDHYLPYAKTVVQR 187

Query: 361 SSYPPACCGRASNEKRG-ERCDFP--LYPTGCLRPALIQLRNYVNSLSALASAMIV 203
             Y P  C +++++++G    D P  ++  GCL     ++ N +N L  + +A +V
Sbjct: 188 VQYIPDSCCKSTHQRKGCALSDSPNNIFYRGCLPFLKEEVYNNLNFLFTVTAASLV 243


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 9/44 (20%)
 Frame = -2

Query: 442 VRSSFAAMQLELKCCGVNS------NLDWYK--H-RSSYPPACC 338
           V++++  + +E  CCGV+S      N  WY+  H R  +PPACC
Sbjct: 173 VKTAWDKIMIEKSCCGVDSKIGEFNNSGWYQLNHGRYQFPPACC 216


>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 442 VRSSFAAMQLELKCCGVNSNLDWYKHRSSYPPACCGRASNEKRG-ERCDFPLYPTGCL 272
           V S++       +CCGV ++ DW    ++ P +CC     E  G  R + PL+  GC+
Sbjct: 131 VESAWDKTHQLFECCGVTNSSDWLTF-TTIPDSCC---IEEIEGCARENAPLFEPGCI 184


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -2

Query: 451 DPAVRSSFAAMQLELKCCGVNSNLDWYKHRSSYPPACCGRASNEKRG 311
           + A + +F  +Q + +CCGV +  DW   R    P+     + E  G
Sbjct: 133 ETAFKDAFDTVQEKFECCGVKTYTDWLSARWDAEPSTQLEVNEEDAG 179


>Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical
           protein F53B6.1 protein.
          Length = 258

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
 Frame = -2

Query: 442 VRSSFAAMQLELKCCGVN--------SNLDWYKHRSS----YPPACCGRASNEK-RGERC 302
           +  S+ A+Q   KCCGVN            WY H+ +     P +CC  +  E+ R    
Sbjct: 144 ITESWDALQSNFKCCGVNGTDNAQIWKTSKWYMHQRAPKLLIPESCCIPSEIERCRSNPF 203

Query: 301 DF----PLYPTGCLRPALIQLRNYVNSLSAL 221
           D     P Y + C  P    L + +N  S L
Sbjct: 204 DQDAPPPYYTSTCYEPLQNDLLHVMNVASWL 234


>Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical
           protein C17G1.8 protein.
          Length = 291

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 421 MQLELKCCGVNSNLDWY 371
           +Q EL+CCGV++  DW+
Sbjct: 140 LQRELQCCGVDNYTDWH 156


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +1

Query: 226 PTASSHSSVAE*GRDASNPSGTRENHTFPRAFH*KHVRSTPEDTSFGAYTNPS*NSLRST 405
           PT SS S++   G  AS+P+G+    TF  A       + P  +S G  +  S  S  S 
Sbjct: 424 PTGSSQSTITPEGSTASSPTGS-TGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSL 482

Query: 406 S 408
           S
Sbjct: 483 S 483


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +1

Query: 226 PTASSHSSVAE*GRDASNPSGTRENHTFPRAFH*KHVRSTPEDTSFGAYTNPS*NSLRST 405
           PT SS S++   G  AS+P+G+    TF  A       + P  +S G  +  S  S  S 
Sbjct: 631 PTGSSQSTITPEGSTASSPTGS-TGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSL 689

Query: 406 S 408
           S
Sbjct: 690 S 690


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +1

Query: 226 PTASSHSSVAE*GRDASNPSGTRENHTFPRAFH*KHVRSTPEDTSFGAYTNPS*NSLRST 405
           PT SS S++   G  AS+P+G+    TF  A       + P  +S G  +  S  S  S 
Sbjct: 631 PTGSSQSTITPEGSTASSPTGS-TGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSL 689

Query: 406 S 408
           S
Sbjct: 690 S 690


>AF273829-1|AAG15178.1|  372|Caenorhabditis elegans nuclear receptor
           NHR-87 protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 763 ADLQRGVCSGCRIYFWTSDLGVELSSSVLFIAGALLCLPT 644
           A + +G C+GCR   W + L   +     F   AL+   T
Sbjct: 251 AKVMKGTCTGCRRKVWNTMLKDNIDQFEFFALSALILFQT 290


>AC024776-16|AAL32242.1|  363|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 87 protein.
          Length = 363

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 763 ADLQRGVCSGCRIYFWTSDLGVELSSSVLFIAGALLCLPT 644
           A + +G C+GCR   W + L   +     F   AL+   T
Sbjct: 242 AKVMKGTCTGCRRKVWNTMLKDNIDQFEFFALSALILFQT 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,212,265
Number of Sequences: 27780
Number of extensions: 415955
Number of successful extensions: 1352
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)