Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b21
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    29   0.053
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          25   1.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.1  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 29.1 bits (62), Expect = 0.053
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
 Frame = -2

Query: 421 MQLELKCCGVNSNLDWYKHRSSYPPACCGRASNEKRGERCDFP-LYPTGCLRPA--LIQL 251
           +Q  L+CCGV+S  D+  +    P +CC    N      C     Y  GC+      ++L
Sbjct: 139 IQKNLQCCGVHSLSDY--NDKPIPASCC----NSPENNTCSISNSYTNGCVEALKDTVKL 192

Query: 250 RNYVNSLSALASAMIVCMAVTLFTAAYTLVTGVVERG 140
              V    A+A A++  + +         +     RG
Sbjct: 193 AGTVFGSVAIAIAIVELIGIICALCLANSIKNAERRG 229


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 68  RNRNDRGRGEGSEHRL 115
           R+R+ RGRG   EHR+
Sbjct: 314 RSRDRRGRGRSREHRI 329


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 113 LRRFEHMSLAPFHDPRH 163
           L  F H++++  HDP H
Sbjct: 364 LHNFGHVAISYIHDPDH 380


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 463 ASSPAPCSRSERPARGERATG 525
           AS+P+  + S  PA+G  A G
Sbjct: 518 ASAPSSSTSSSPPAKGAAAAG 538


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 748 HAADPPKMAPPLNKSPAHANKTKPLL 825
           + A PP +A PLN +P      + LL
Sbjct: 210 YTACPPTLACPLNPNPQPLTGQQELL 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,080
Number of Sequences: 438
Number of extensions: 5017
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)