Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10b19
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 35 0.011
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 32 0.10
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 31 0.18
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 29 0.54
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 29 0.71
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 28 1.2
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 28 1.6
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 27 2.2
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 27 2.9
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 3.8
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 27 3.8
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 26 5.0
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi... 26 5.0
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 26 6.6
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 26 6.6
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 6.6
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.6
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 8.8
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 8.8
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun... 25 8.8
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 35.1 bits (77), Expect = 0.011
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Frame = -2
Query: 637 KILEYDPRSPSIGIERTPLVVPKIDDNDSVDNVEEMSDDTLLKVLQKSNVEIGHGLEAQT 458
+++EYDP+S +I + + V D N ++N + + DD + +K N + +
Sbjct: 110 EVVEYDPKSNAI-VGTSFTRVHDYDKNSPIENEKILEDDQHTAMKEKDNESDKTMKDVEE 168
Query: 457 NSDGLLVYEDESI------DLQNTPKKSKSSSNDGSR 365
++ L E+E I D Q+T S SS N+G R
Sbjct: 169 KTEPSLKKEEEDIQMKEPLDSQDTGAVSASSVNEGFR 205
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 31.9 bits (69), Expect = 0.10
Identities = 25/83 (30%), Positives = 40/83 (48%)
Frame = -2
Query: 409 NTPKKSKSSSNDGSRTPLSCMKNKADTGHTRSKSANTVFDPKGSDIKHCKKISHIPRLKS 230
N KK S+ N R P++C+ D+ K T+ KH K S+
Sbjct: 464 NFLKKIASARNAARREPINCIL--LDSNPLSLKGVITMS-------KHVKSWSYTIPKPF 514
Query: 229 LSKQSKILPAGSSISLKNISKAS 161
++K+SK+LP S++ N+SK+S
Sbjct: 515 VNKRSKVLPLRPSVTHDNLSKSS 537
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 31.1 bits (67), Expect = 0.18
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 361 VFSNHHYWKILTFLEYFVSL*THP--HKPIIHLNLFVLLNHVQFPHYSFAKLSEGYHQTF 534
+FSN H ILTFL F+SL P P+ L + + FP + +L+ + +
Sbjct: 2001 LFSNSHIEAILTFLIKFLSLFPEPVEENPLSKKGLSLFNDLFSFPRWKDCQLNSNFFEKI 2060
Query: 535 L 537
L
Sbjct: 2061 L 2061
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 29.5 bits (63), Expect = 0.54
Identities = 30/91 (32%), Positives = 46/91 (50%)
Frame = -2
Query: 613 SPSIGIERTPLVVPKIDDNDSVDNVEEMSDDTLLKVLQKSNVEIGHGLEAQTNSDGLLVY 434
S IG+E L V D N SV +E + + KV+ K E+G L+A +G+ Y
Sbjct: 309 SSFIGLE---LAVVLKDHNVSVIGMESIPFE---KVMGK---EVGTALKALHEQNGIAFY 359
Query: 433 EDESIDLQNTPKKSKSSSNDGSRTPLSCMKN 341
L+N+ K+ K+SSND S+ +K+
Sbjct: 360 ------LENSIKEVKTSSNDSSKAEHIVLKD 384
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 29.1 bits (62), Expect = 0.71
Identities = 17/78 (21%), Positives = 31/78 (39%)
Frame = -2
Query: 643 VFKILEYDPRSPSIGIERTPLVVPKIDDNDSVDNVEEMSDDTLLKVLQKSNVEIGHGLEA 464
V I YDP S G+E + ++ + ++ D +L+ Q N+ I +
Sbjct: 119 VLYIQVYDPYKASYGVEDADYAISQLAQTTMRSEIGRLTLDHVLRERQSLNIHITDAINK 178
Query: 463 QTNSDGLLVYEDESIDLQ 410
S G+ E D++
Sbjct: 179 AAESWGIRCLRHEIRDIR 196
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 472 LEAQTNSDGLLVYEDESIDLQNTPKKSKSSSNDGSRTP 359
LE + +G+L ED+ IDL P ++ S D S P
Sbjct: 177 LEEEAVEEGVLGDEDDGIDLLMDPDENMEDSEDESNGP 214
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Frame = -2
Query: 574 PKIDDNDSVDNVEEMSDDTLLKVLQKSNVEIGHGLEAQTNSDGLLVYEDESIDLQNTPKK 395
P + SV N+ D + + + L++ T+ + ED+S+ T
Sbjct: 102 PSSPTHPSVSNITVDGDSKKHSLQLQEEEKSSESLDSHTHPPKRVRNEDDSLTFSKTSPV 161
Query: 394 SKSSSNDG-SRTPLSCMKNKADTGHTRSKSANTV 296
S SS DG S T + NK + + S S + +
Sbjct: 162 SPSSLKDGASNTVTNDASNKIKSEASESASPSAL 195
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/72 (25%), Positives = 29/72 (40%)
Frame = -2
Query: 505 LQKSNVEIGHGLEAQTNSDGLLVYEDESIDLQNTPKKSKSSSNDGSRTPLSCMKNKADTG 326
L SNV + T G + ++ + K+SKS +G + +K+ T
Sbjct: 372 LNASNVRTNFSQKTDTKKWGAYKMKSRNLLYSQSQKESKSRLFNGHEEISNAVKSLPATA 431
Query: 325 HTRSKSANTVFD 290
H S + VFD
Sbjct: 432 HDLSDRSQWVFD 443
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 27.1 bits (57), Expect = 2.9
Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Frame = -2
Query: 580 VVPKIDDNDSVDNVEEMSDDTLLKVL--QKSNVEIGHGLEAQTNSDGLLVYEDESIDLQN 407
++ +++ + + +VE + L KVL + SN+ +G + +++ L + D +
Sbjct: 68 ILLEVETDKATMDVEVQDNGILAKVLIEKGSNIPVGKNIAIVADAEDNLKDLELPKDEAS 127
Query: 406 TPKKSKSSSNDGSRTPLSCMKNKADTGHTRSKSANTV----FDPKGSDIKHCKKISH 248
+ ++S SSS + + + + K++ H + AN F P S + H KI +
Sbjct: 128 SEEQSFSSSKEEVKPIVQDRETKSNVEHKSTSQANDAVNKSFLPSVSYLIHQYKIEN 184
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 3.8
Identities = 31/97 (31%), Positives = 46/97 (47%)
Frame = -2
Query: 409 NTPKKSKSSSNDGSRTPLSCMKNKADTGHTRSKSANTVFDPKGSDIKHCKKISHIPRLKS 230
N P+ S SSS SRT L + +T H+ KSA K S K S +P KS
Sbjct: 158 NIPRTSMSSSPTASRTSLRKGAGELET-HSAVKSAK-----KAS----VKSKSVLPPSKS 207
Query: 229 LSKQSKILPAGSSISLKNISKASIISGDCENTPPHSH 119
L++ LPA S + N ++A++++ N+ H
Sbjct: 208 LARTG--LPAEVS-TQNNANRAALLAWGSLNSSKPKH 241
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 26.6 bits (56), Expect = 3.8
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = -2
Query: 607 SIGIERTPLVVPKID-DNDSVDNVEEMSDDTLLKVLQKSNVEIGHGLEAQTNSDGLLVYE 431
+IG ER PL VP + +S++ +S+D + K + NVE+ H + Q + L+ +
Sbjct: 53 NIGNERNPLNVPLFELPVNSLELQNSVSND-MFKHVYSQNVELNH--KTQVDFTEQLIPK 109
Query: 430 DESIDLQNTPKKSKSSSNDGSRTPLSCMKNKAD 332
L T +++ S LS N D
Sbjct: 110 KSLNKLNGTLRETMSRMPSFESISLSETSNALD 142
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 26.2 bits (55), Expect = 5.0
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 2/107 (1%)
Frame = -2
Query: 598 IERTPLV--VPKIDDNDSVDNVEEMSDDTLLKVLQKSNVEIGHGLEAQTNSDGLLVYEDE 425
+ R P V + KI D V S K +K + L Q + LL E+
Sbjct: 480 LSRYPSVEEIDKITDKIEVSKPLRNSGPLAFKPFEKISANKQTDL-LQNKPEALLDLENR 538
Query: 424 SIDLQNTPKKSKSSSNDGSRTPLSCMKNKADTGHTRSKSANTVFDPK 284
+ + +PK S+ SS+ GS+ LS T+ KS N + K
Sbjct: 539 FLP-KPSPKPSEFSSSVGSKQNLSMDIPSVQNVSTKQKSTNDTDNSK 584
>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 308
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +2
Query: 617 RIIFQNFKYWHTLFSTIIDFGGIWI*HAVSLTIKFYITNFIT 742
R+ F+ F+Y L ++II+FGG++ + + + +++IT
Sbjct: 160 RLFFRTFRYVF-LITSIIEFGGLFASNGKRGVLSHFRSSYIT 200
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 7 INHIHYLYIGIISSVESKLKLCQYFIVQHC 96
+N+I YL +GI++S S L +C+ F V C
Sbjct: 489 MNNIAYL-LGIVTSFLSHLIICKIFPVTAC 517
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +2
Query: 683 IWI*HAVSLTIKFYITNFITIK 748
IW+ H ++L +K+ +NF+++K
Sbjct: 710 IWVSHWLNLMLKYVESNFLSVK 731
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 412 QNTPKKSKSSSNDGSRTPLSCMKNKADTGHTR 317
Q P +S S +D R+P+ C+ DTG T+
Sbjct: 469 QAAPAESNVSESD-LRSPICCILGHVDTGKTK 499
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -2
Query: 466 AQTNSDGLLVYEDESIDLQNTPKKSKSSSNDGSRTPLSCMKNKADTGHTRSKSAN 302
+ ++S LV S TP + SSS+ S + S K+ + + + S+S++
Sbjct: 120 SSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSS 174
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 568 IDDNDSVDNVEEMSDD 521
+D NDS DN++E DD
Sbjct: 429 LDYNDSADNIDEHKDD 444
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = -2
Query: 688 PDSTEVNDSREQCMPVFKILEYDPRSPSIG--IERTPLVVPKIDDNDSVDNVEEMSDDT 518
PD++ +N +R F PRSPS L PK +D + + +DT
Sbjct: 140 PDASSINTNRSSSDNGFLTPSSSPRSPSCSRVFNAVQLCSPKKSKDDITTPKKRLMEDT 198
>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -2
Query: 289 PKGSDI--KHCKKISHIPRLKSLSKQSKILPAGSSISLKNISKA 164
PK + + +HC K IP SLS+Q + G+SIS+ ++S A
Sbjct: 9 PKNAKVIYEHCLK--QIPN--SLSQQDLVEAIGASISVNDLSSA 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,870
Number of Sequences: 5004
Number of extensions: 68681
Number of successful extensions: 245
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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