Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10b19
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 32 0.56
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 31 0.74
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 31 1.3
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 29 3.0
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381... 29 3.0
06_01_0724 + 5299278-5299542,5299690-5299950,5300246-5300351,530... 29 5.2
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157... 29 5.2
03_01_0289 + 2242584-2242931,2242973-2243005,2244158-2244241,224... 28 6.9
01_05_0389 + 21716056-21716191,21716275-21716597,21716889-217175... 28 6.9
03_06_0045 - 31259107-31259385,31259509-31259745,31260427-312604... 28 9.2
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 31.9 bits (69), Expect = 0.56
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Frame = -2
Query: 700 SMSNPDSTEVNDSREQCMPVFKILEYDPRSPSIGIERTPLVVPKIDDNDSVDNVEEMSDD 521
S S D E D +++ F I E P+ + E +V +++ ++E + +
Sbjct: 1589 STSTDDVVEAADLQDE---TFYIEE--PKEAKLADENNKMVTVEMESLVKNLSLELLESE 1643
Query: 520 TLLKVLQKSNVEIGHGLEAQTNSDGLLVYED-ESIDLQNTPKKSKSSSNDGSRTPLSC-M 347
+ + + +++GH ++ N GLLV ED + I L+ KS+ + + L C
Sbjct: 1644 KNVMLEYEKEMKVGHVGQSDENDVGLLVEEDAKKIKLEEADSDIKSNVDKKAFQILQCEY 1703
Query: 346 KNKADTGHTRSKS 308
++A G SKS
Sbjct: 1704 MDEAKFGTVDSKS 1716
>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 31.5 bits (68), Expect = 0.74
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = -2
Query: 565 DDNDSVDNVEEMSDDTLLKVLQKSNVEIGHGLEAQTNSDGLLV-YEDESIDLQNTPKKSK 389
DD+D E+ D L ++ S E G + +++S + EDES + P+K +
Sbjct: 1715 DDDDDESGDEDDGSDELPAEMESSEEEDGSDGQDESSSSMVSTDEEDESDEEDEIPEKPE 1774
Query: 388 SSSNDGSRTPLSCMKNKADTGHTRSKSANT 299
SS + + LS K H K+ ++
Sbjct: 1775 SSKLTAAGSTLSSGKKSKTATHFGQKTGDS 1804
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Frame = -2
Query: 427 ESIDLQNTPKKSKSSSNDGSRTPLSCMKNKADTGHTRSKSANTVFDPKGS----DIK-HC 263
ESI+L K SS D C + ++ S + P+ S DI+ C
Sbjct: 1210 ESIELSPHSKALPESSPDNQDIEPEC-PSPPQIPESKELSRQSKILPESSPGNQDIEPEC 1268
Query: 262 KKISHIPRLKSLSKQSKILPAGS 194
IP K LS+QSKILP S
Sbjct: 1269 PSPPQIPESKELSQQSKILPESS 1291
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/35 (54%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 289 PKGSDIKHCKKISH--IPRLKSLSKQSKILPAGSS 191
P DIK C+ S IP K LS QSKILP SS
Sbjct: 1292 PDNHDIK-CEYSSPTPIPESKELSLQSKILPESSS 1325
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/135 (18%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Frame = -2
Query: 595 ERTPLVVPKIDDNDSV-DNVEEMSDDTLLKVLQKSNVEIGHGLEAQTNSDGLLVYEDESI 419
E P + K ++ + V + ++E S + ++ K ++ LE N ++ S+
Sbjct: 443 EEIPKLQEKFNEEEKVLEQIKENSREETERLRSKLT-QVRSELEPWENQ---IIEHKGSL 498
Query: 418 DLQNTPKKSKSSSNDGSRTPLSCMKNKADTGHTRSKSANT-VFDPKGSDIKHCKKISHIP 242
D+ + KK +DG+R L+ +N+ ++ + K+ +T + + + KH + +
Sbjct: 499 DVASAEKKLMKEKHDGARAELTAAQNQMESIKEQIKAKDTYIMELQEKIEKHHSEANEAR 558
Query: 241 RLKS--LSKQSKILP 203
+++ L ++ ++P
Sbjct: 559 KVEQECLKQEESLIP 573
>03_05_0124 + 21034963-21035181,21035618-21037466,21037485-21038194,
21038426-21038470,21038557-21038745
Length = 1003
Score = 29.5 bits (63), Expect = 3.0
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = -2
Query: 514 LKVLQKSNVE-IGHGLEAQTNSDGLLVYEDESIDLQNTPKKSK-SSSNDGSRTPLSCMKN 341
L V++ VE IG + +++ V E+ ++ +N PK + + DG L +K
Sbjct: 806 LVVIRMEEVERIGQEFHGENSTNRFPVLEE--LEFENMPKWVEWTGVFDGDFPSLRELKI 863
Query: 340 KADTGHTRSKSANTVFDPKGSDIKHCKKISHIPRLKSLS 224
K D+G R+ K IK C+K++ +P + +L+
Sbjct: 864 K-DSGELRTLPHQLSSSLKKLVIKKCEKLTRLPTIPNLT 901
>06_01_0724 +
5299278-5299542,5299690-5299950,5300246-5300351,
5300633-5300697,5300759-5301233,5302239-5302347,
5302432-5302710,5303025-5303231,5303319-5303468,
5304164-5304277
Length = 676
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = -2
Query: 514 LKVLQKSNVEIGHGLE-AQTNSDGLLVYEDESIDLQNTPKKSKSSSNDGSRTPLSCMKNK 338
++V++ V +G L A+ + DG ++DL S+S+ G L+C +
Sbjct: 345 MEVVRDIRVVVGGMLRVARGSGDGGQAEAAPAVDLAGACGLGTSTSSTGMENELTCRRTT 404
Query: 337 ADTGHTR---SKSANTVFDPKGSDI 272
+D H + K N FD D+
Sbjct: 405 SDHCHQKLNHGKGRNVQFDDLPEDV 429
>04_04_0411 -
25014511-25015015,25015098-25015169,25015700-25015734,
25015805-25015873,25015993-25016044,25016444-25016526,
25016625-25016726,25017150-25017884,25017962-25018012,
25018792-25018983,25019066-25019216,25020012-25020193,
25020329-25020532,25020752-25020859
Length = 846
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Frame = -2
Query: 433 EDESIDLQNTPKKSKSSSNDGSRTPLSCMK---------NKADTGHTRSKS 308
E++ D+ TPK + N+G R+ S K NK +TG+T+S S
Sbjct: 719 ENDDEDISKTPKSGSALKNEGGRSSRSTGKTKDGLLKGSNKDETGNTKSAS 769
>03_01_0289 +
2242584-2242931,2242973-2243005,2244158-2244241,
2244640-2245782
Length = 535
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 457 LFVLLNHVQFPHYSFAKLSEGYHQTFLRHCPHCHCHL 567
+FV++ FPH +S + + HC CHC++
Sbjct: 124 VFVVIACRDFPHPRHLCVSMPFTSSHADHCAMCHCYV 160
>01_05_0389 +
21716056-21716191,21716275-21716597,21716889-21717518,
21717602-21718054
Length = 513
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +3
Query: 171 EIFFKDILLPAGSILDCFDKDFSLGI*EIFLQCFMSLPFGSKTVFADFDLV*PVSALFFI 350
EIF +I A S++ F+ F+ I +IFL L FG F +L+ FF+
Sbjct: 415 EIFPLEIRSAAQSVVVVFNMAFTFIIAQIFLMMLCHLKFGLFYFFGAMELIMTGFVFFFL 474
>03_06_0045 -
31259107-31259385,31259509-31259745,31260427-31260477,
31260541-31260908,31260992-31261250
Length = 397
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 500 LQNFQKGIIRHFFDIVHTVIVIYFRH 577
L+ +KG+ RHF D + ++V RH
Sbjct: 330 LKTIEKGVRRHFHDDISVIVVYLDRH 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,192,155
Number of Sequences: 37544
Number of extensions: 362225
Number of successful extensions: 1066
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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