Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b19
         (752 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB051866-1|BAB87242.1| 1470|Homo sapiens RIM long form protein.        33   0.83 
AB045726-1|BAB87121.1| 1028|Homo sapiens RIM short form protein.       33   0.83 
AB002338-1|BAA20798.1| 1053|Homo sapiens KIAA0340 protein.             33   0.83 
U53209-1|AAC50658.1|  282|Homo sapiens transformer-2 alpha protein.    31   5.9  
BC017094-1|AAH17094.1|  282|Homo sapiens transformer-2 alpha pro...    31   5.9  
AC023105-1|AAQ96870.1|  282|Homo sapiens unknown protein.              31   5.9  
AB097048-1|BAC77401.1|  282|Homo sapiens putative MAPK activatin...    31   5.9  

>AB051866-1|BAB87242.1| 1470|Homo sapiens RIM long form protein.
          Length = 1470

 Score = 33.5 bits (73), Expect = 0.83
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = -2

Query: 331 TGHTRSKSANTVFDPKGSDIKHCKKISHIPRLKS---LSKQSKILPAGSSISLKNISKAS 161
           T  TR+  A  + +      +H    +  P LK+   L KQS++ P+ + + L+N S +S
Sbjct: 433 TAETRAPGAKQLTNHSPPAPRHGPVPAEAPELKAQEPLRKQSRLDPSSAVLMLRNDSLSS 492

Query: 160 IISGDCENTPPHSHRDR 110
             S     +PP  HR +
Sbjct: 493 DQSESVRPSPPKPHRSK 509


>AB045726-1|BAB87121.1| 1028|Homo sapiens RIM short form protein.
          Length = 1028

 Score = 33.5 bits (73), Expect = 0.83
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = -2

Query: 331 TGHTRSKSANTVFDPKGSDIKHCKKISHIPRLKS---LSKQSKILPAGSSISLKNISKAS 161
           T  TR+  A  + +      +H    +  P LK+   L KQS++ P+ + + L+N S +S
Sbjct: 433 TAETRAPGAKQLTNHSPPAPRHGPVPAEAPELKAQEPLRKQSRLDPSSAVLMLRNDSLSS 492

Query: 160 IISGDCENTPPHSHRDR 110
             S     +PP  HR +
Sbjct: 493 DQSESVRPSPPKPHRSK 509


>AB002338-1|BAA20798.1| 1053|Homo sapiens KIAA0340 protein.
          Length = 1053

 Score = 33.5 bits (73), Expect = 0.83
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = -2

Query: 331 TGHTRSKSANTVFDPKGSDIKHCKKISHIPRLKS---LSKQSKILPAGSSISLKNISKAS 161
           T  TR+  A  + +      +H    +  P LK+   L KQS++ P+ + + L+N S +S
Sbjct: 458 TAETRAPGAKQLTNHSPPAPRHGPVPAEAPELKAQEPLRKQSRLDPSSAVLMLRNDSLSS 517

Query: 160 IISGDCENTPPHSHRDR 110
             S     +PP  HR +
Sbjct: 518 DQSESVRPSPPKPHRSK 534


>U53209-1|AAC50658.1|  282|Homo sapiens transformer-2 alpha protein.
          Length = 282

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -2

Query: 406 TPKKSKSSSNDGSRTPLSCMKNKADTGHTRSKSANTVFDPKGSDIKHCKKISHIPRLKSL 227
           TP + KS S  GSR+P    K+      +RSKS +             +  SH  R +S 
Sbjct: 24  TPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHRRRSR 83

Query: 226 SK 221
           S+
Sbjct: 84  SR 85


>BC017094-1|AAH17094.1|  282|Homo sapiens transformer-2 alpha
           protein.
          Length = 282

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -2

Query: 406 TPKKSKSSSNDGSRTPLSCMKNKADTGHTRSKSANTVFDPKGSDIKHCKKISHIPRLKSL 227
           TP + KS S  GSR+P    K+      +RSKS +             +  SH  R +S 
Sbjct: 24  TPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHRRRSR 83

Query: 226 SK 221
           S+
Sbjct: 84  SR 85


>AC023105-1|AAQ96870.1|  282|Homo sapiens unknown protein.
          Length = 282

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -2

Query: 406 TPKKSKSSSNDGSRTPLSCMKNKADTGHTRSKSANTVFDPKGSDIKHCKKISHIPRLKSL 227
           TP + KS S  GSR+P    K+      +RSKS +             +  SH  R +S 
Sbjct: 24  TPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHRRRSR 83

Query: 226 SK 221
           S+
Sbjct: 84  SR 85


>AB097048-1|BAC77401.1|  282|Homo sapiens putative MAPK activating
           protein protein.
          Length = 282

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -2

Query: 406 TPKKSKSSSNDGSRTPLSCMKNKADTGHTRSKSANTVFDPKGSDIKHCKKISHIPRLKSL 227
           TP + KS S  GSR+P    K+      +RSKS +             +  SH  R +S 
Sbjct: 24  TPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHRRRSR 83

Query: 226 SK 221
           S+
Sbjct: 84  SR 85


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,100,377
Number of Sequences: 237096
Number of extensions: 2143892
Number of successful extensions: 5668
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5662
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)