Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b19
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr...    32   0.38 
AL117195-3|CAB55009.1|  629|Caenorhabditis elegans Hypothetical ...    32   0.50 
Z29560-7|CAA82659.1|   88|Caenorhabditis elegans Hypothetical pr...    31   0.88 
U40952-9|AAA81742.1|  253|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF002197-2|AAB53983.2|  486|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U39998-5|AAK71421.2|  408|Caenorhabditis elegans Gustatory recep...    28   6.2  
AF016423-6|AAB65325.1|  258|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...    28   6.2  
U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein ...    28   8.2  
AF099925-4|AAR12970.2|  273|Caenorhabditis elegans Hypothetical ...    28   8.2  
AF003130-14|AAB54129.1|  892|Caenorhabditis elegans Hypothetical...    28   8.2  

>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical
           protein C34F6.9 protein.
          Length = 1181

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = -2

Query: 436 YEDESIDLQNTPKKSKSSSNDGSRTPLSCMKNKADTGHTRSKSANTVFDPKGSDIKHCKK 257
           Y  E++  Q      + S  D + TP S  +  +   ++ +K+A+ V++P  +D     K
Sbjct: 721 YPPETVSPQELHSLKRKSLPDDNTTP-SKQRRSSRLKNSTAKTADFVYEPAVTDRSEQDK 779

Query: 256 ISHIPRLKSLSKQS 215
              +PR K++ K S
Sbjct: 780 SPSLPREKNIGKDS 793


>AL117195-3|CAB55009.1|  629|Caenorhabditis elegans Hypothetical
           protein Y57A10A.4 protein.
          Length = 629

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 19/66 (28%), Positives = 35/66 (53%)
 Frame = -2

Query: 562 DNDSVDNVEEMSDDTLLKVLQKSNVEIGHGLEAQTNSDGLLVYEDESIDLQNTPKKSKSS 383
           D+D V++V  M ++ +L  +      IGH      N + ++V ED++  +   P+ S +S
Sbjct: 331 DDDEVEDVGGMDEEPVLLPIDSDESHIGH----LQNGEEMMV-EDDNQPIPEDPQYSANS 385

Query: 382 SNDGSR 365
           S+ G R
Sbjct: 386 SHQGRR 391


>Z29560-7|CAA82659.1|   88|Caenorhabditis elegans Hypothetical
           protein K03H1.7 protein.
          Length = 88

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = -2

Query: 622 DPRSPSIGIERTPLVVPKIDDNDS 551
           DPRSPS  IERTP+ V  ++++++
Sbjct: 30  DPRSPSQDIERTPIQVKTVENDEN 53


>U40952-9|AAA81742.1|  253|Caenorhabditis elegans Hypothetical
           protein C03B1.4 protein.
          Length = 253

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 688 PDSTEVNDSREQCMPVFKILEYDPRSPSIGIERTPLVVPKIDDNDSV 548
           PD+T++ +  +  M  FK  EY  +  ++ +    L +PK++D   V
Sbjct: 18  PDATDLKEDIDVHMEEFKAFEYRFKLTNVVLRALTLPIPKLEDESEV 64


>U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical
           protein F18F11.3 protein.
          Length = 427

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 736 EVCDIEFNSKRNSMSNPDSTEVNDSREQCMPVFKILEYDPRSPSIGIER 590
           ++ D+  NS + S + P S E++++ E    +FK+   DP +   GI R
Sbjct: 123 QIVDVNDNSPQFS-NTPSSFEISENAEIGTDIFKVTTLDPDTGISGISR 170


>AF002197-2|AAB53983.2|  486|Caenorhabditis elegans Hypothetical
           protein F20H11.1 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -2

Query: 613 SPSIGIERTPLVVPKIDDNDSVDNVEEMSDDTLLKVLQKSNVE-IGHGLEAQTNSDGLLV 437
           +PS    ++  ++ KID+N+    V+EM DD       +++VE I   LE   +    L+
Sbjct: 16  TPSTRSRKSSWLISKIDENEIDKEVQEMMDDWRRSNEAENHVECIKAALEYCRDKLKELL 75

Query: 436 YEDESIDLQNTPKKSK 389
            ++E  ++     K+K
Sbjct: 76  IDEEDTEMDGKETKTK 91


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 556  DSVDNVEEMSDDTLLKVLQKSNVEIGHGLEAQTNSDGLLVYEDE-SIDLQNTPKKSKSSS 380
            D+ D  EEM +   ++ L+          EA+ +++  +  ED+ + DLQ+  K  K   
Sbjct: 3629 DAKDVTEEMEETGQIEGLEDEQPVDSEEHEAKNDNEKPIDMEDDFAEDLQDIDKNEKGDQ 3688

Query: 379  NDG 371
            NDG
Sbjct: 3689 NDG 3691


>Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical
           protein R07B5.6 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 606 EGERGSYSKILNTGIHCSLLSLTSVESGFDMLFLLLLNSISQTSLQSK 749
           +G R SY  ++ + + CSL  L SV   F +   +  NS ++T  QSK
Sbjct: 194 DGWRNSYIHLVMSIVMCSLTILCSVVMLFKLRQSVFSNSSARTKEQSK 241


>U39998-5|AAK71421.2|  408|Caenorhabditis elegans Gustatory receptor
           family protein 5 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 238 LKSLSKQSKILPAGSSISLKNIS-KASIISGDCENTP 131
           L S+SK S I    S+ SLKN+S K S+  GD ENTP
Sbjct: 2   LTSVSKISII----STESLKNVSSKISLSKGDYENTP 34


>AF016423-6|AAB65325.1|  258|Caenorhabditis elegans Hypothetical
           protein F40A3.6 protein.
          Length = 258

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 445 LLVYEDESI-DLQNTPKKSKSSSNDGSRTPLSCMKNKADTGHTRSKSANTVFDPKGSD 275
           L  Y+ E   D    PKK+  SS    R PLS  K++ D  + ++ +  T+ D K  D
Sbjct: 147 LASYDKEDYEDFTGEPKKNLYSSISSYRPPLSSYKSREDEEYEKN-NRKTLIDYKDFD 203


>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 28/97 (28%), Positives = 40/97 (41%)
 Frame = -2

Query: 499 KSNVEIGHGLEAQTNSDGLLVYEDESIDLQNTPKKSKSSSNDGSRTPLSCMKNKADTGHT 320
           KS V+   G E   +SD      DE  DL    KK K+   D S    S   ++ D+G  
Sbjct: 452 KSTVK-AEGREQDDDSDDEST--DEDYDLDKDMKKQKND-KDSSEGSGSEPDDEYDSGSE 507

Query: 319 RSKSANTVFDPKGSDIKHCKKISHIPRLKSLSKQSKI 209
           +  S     DP   +I+  KK S   + K   K+  +
Sbjct: 508 KDASGTGESDPDEENIEPKKKESKEKKNKREKKEKPV 544


>U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein
           related protein 10 protein.
          Length = 1382

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -2

Query: 592 RTPLVVPKIDDNDSVDNVEEMSDDTLLKVLQK--SNVEIGHGLEAQTNSDGLLVYEDESI 419
           R P+V+   +   ++DN+ E   +  + +  +  + + I H L    NSD ++V  +  I
Sbjct: 604 RKPIVLIFDEATSALDNIHEEEVNAAIDLASEGLTTITIAHRLSTIKNSDRIIVLHEGKI 663

Query: 418 DLQNTPKKSKSSSN 377
             +  P +  + +N
Sbjct: 664 VEEGVPDELIADAN 677


>AF099925-4|AAR12970.2|  273|Caenorhabditis elegans Hypothetical
           protein K01A2.4 protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -2

Query: 388 SSSNDGSRTPLSCMKNKADTGHTRSKSANTVFDPKGSDIKHCKKISHIPR 239
           + + D S+TP    K+  D   T S       DPK +   H  K  HIP+
Sbjct: 26  ADATDPSKTPTDGNKDATDQKKTSSNENKDATDPKQTPTDH--KDEHIPQ 73


>AF003130-14|AAB54129.1|  892|Caenorhabditis elegans Hypothetical
           protein F55A12.1 protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/68 (22%), Positives = 31/68 (45%)
 Frame = -2

Query: 739 NEVCDIEFNSKRNSMSNPDSTEVNDSREQCMPVFKILEYDPRSPSIGIERTPLVVPKIDD 560
           N   +++ N  ++ +   +  ++N+   + +P   +  Y PR+ SI +    L     D 
Sbjct: 132 NLFSELDANGTKSKVFQINGADINNDDLKTLPCISLEIYAPRNNSITLSAENLSKRTADQ 191

Query: 559 NDSVDNVE 536
           N  V+N E
Sbjct: 192 NIEVNNRE 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,095,904
Number of Sequences: 27780
Number of extensions: 369698
Number of successful extensions: 1285
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)