Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b19
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.76 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   4.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   4.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.4  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -2

Query: 433 EDESIDLQNTPKKSKSS---SNDGSRTPLSCMKNKADTGHT 320
           ED   ++   PKKS  S   S+DG   PLS +KNK +T H+
Sbjct: 422 EDHDENMIIPPKKSDMSNMQSDDGG--PLS-LKNKVETTHS 459


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 325 HTRSKSANTVFDPKGSDIKH 266
           H R K   T F+P+ +D +H
Sbjct: 156 HPRYKRPRTTFEPRATDSRH 175


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 490 VEIGHGLEAQTNSDGLLVYEDESIDLQNTPKKSKSSSNDG 371
           V IGH    ++ + G L+Y+   ID +   K  K +   G
Sbjct: 11  VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG 50


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 490 VEIGHGLEAQTNSDGLLVYEDESIDLQNTPKKSKSSSNDG 371
           V IGH    ++ + G L+Y+   ID +   K  K +   G
Sbjct: 11  VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG 50


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 473 TMSNFHITLLQNFQKGIIRHFFDIVHTVIVIYF 571
           ++ N  + +L +     I HFFD+V  +I   F
Sbjct: 226 SIGNSLMVILPDLVGKKITHFFDLVRPLIAFKF 258


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -2

Query: 598 IERTPLVVPKIDDNDSVDNVEEMSDDTL 515
           +E TP++  +   + S+D+   +S+ +L
Sbjct: 528 LETTPVLPSRFQSHPSIDSANTISNSSL 555


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,209
Number of Sequences: 438
Number of extensions: 4386
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)