Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b17
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    28   1.4  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    28   1.9  

>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 389 QYYLDGNNVPYLPYSQYMNSKMY 321
           +Y L+ N +PYLP ++  N K+Y
Sbjct: 264 EYPLNANALPYLPQTEEKNDKLY 286


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 641 FRNFQEL*ITFCICLIMHYVSSIFYLCCYKFYVKYKICI*LLFLF 507
           FRN+    + +C+C   H+   +  L    +  KY   +  +FLF
Sbjct: 111 FRNYMRNGLFYCVCDSRHFTQRLVTLYYLNYLTKYLELMDTVFLF 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,893
Number of Sequences: 5004
Number of extensions: 54533
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)