Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b17
         (841 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118383-1|AAM48412.1|  861|Drosophila melanogaster RE28322p pro...    36   0.091
AE013599-2865|AAF57572.2|  861|Drosophila melanogaster CG9416-PA...    36   0.091

>AY118383-1|AAM48412.1|  861|Drosophila melanogaster RE28322p
           protein.
          Length = 861

 Score = 35.5 bits (78), Expect = 0.091
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = -3

Query: 794 LQFLKHM*CLFINVISVFIAMY-LQS*IRLFKALENFTKVFL*KL**KTLSSFRNFQEL* 618
           +Q L H  CL + +I+  +  Y ++S   +   +  +T   L  L   T +   NF  L 
Sbjct: 481 IQLLMHSHCLILTIITAIMVSYSIRSAFVIMLCIGFYTLSVLINL--VTKAHKTNFLWL- 537

Query: 617 ITFCICLIMHYVSSIFYLCCYKFYVKY 537
           I  CIC ++ ++   +  CCY FYV +
Sbjct: 538 IPHCICQVLPFM--FYTYCCYAFYVVF 562


>AE013599-2865|AAF57572.2|  861|Drosophila melanogaster CG9416-PA
           protein.
          Length = 861

 Score = 35.5 bits (78), Expect = 0.091
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = -3

Query: 794 LQFLKHM*CLFINVISVFIAMY-LQS*IRLFKALENFTKVFL*KL**KTLSSFRNFQEL* 618
           +Q L H  CL + +I+  +  Y ++S   +   +  +T   L  L   T +   NF  L 
Sbjct: 481 IQLLMHSHCLILTIITAIMVSYSIRSAFVIMLCIGFYTLSVLINL--VTKAHKTNFLWL- 537

Query: 617 ITFCICLIMHYVSSIFYLCCYKFYVKY 537
           I  CIC ++ ++   +  CCY FYV +
Sbjct: 538 IPHCICQVLPFM--FYTYCCYAFYVVF 562


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,978,907
Number of Sequences: 53049
Number of extensions: 471739
Number of successful extensions: 829
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)