Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b17
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81458-2|CAB03822.1|  386|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AF000299-10|AAC47986.1|  338|Caenorhabditis elegans Seven tm rec...    28   7.2  

>Z81458-2|CAB03822.1|  386|Caenorhabditis elegans Hypothetical
           protein C03E10.3 protein.
          Length = 386

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 152 DIRRKFASNSVLIAKIVNF*MFS*FKDLHXKLIKNIY 42
           +I+RKF + +V +  I+NF  F  F D H  L K ++
Sbjct: 73  EIQRKFENVNVTMGFIINFTTFFYFLDAHIGLYKKMF 109


>Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical
           protein T05C12.5 protein.
          Length = 168

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 222 NLFKLNGSKKIIITCT 269
           NL KLNGSKK ++ CT
Sbjct: 103 NLVKLNGSKKFLVHCT 118


>AF000299-10|AAC47986.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 162 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -3

Query: 617 ITFCICLIMHYVSSIFYLCCYKFYVKYKICI*LLFLFCWPFASSLFSAFDVCFKLTCK 444
           IT C  +++ +  S F L  YK+ + Y   + L + F     + L  ++  CF++  K
Sbjct: 19  ITNCTLILLIFSRSPFKLGTYKYLMVYFASVSLFYSFLECLLNPLLLSYKDCFQVIVK 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,121,749
Number of Sequences: 27780
Number of extensions: 288928
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)