Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10b15
(386 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po... 29 0.34
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 1.4
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 4.1
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo... 25 5.5
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 5.5
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 24 7.2
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 24 7.2
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 24 9.6
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c... 24 9.6
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 24 9.6
>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 295
Score = 28.7 bits (61), Expect = 0.34
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = -3
Query: 276 LINKCGTNEVYKPCQFYEEYTCWTSSSKMERTRTLSKKFKHCVDGCY 136
+I +E+ + C +Y W S +L K ++H +DG Y
Sbjct: 75 IIENSNIDELKQQCFYYYLLKDWEKSETYSEQVSLPKNYQHLMDGYY 121
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 26.6 bits (56), Expect = 1.4
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = -3
Query: 300 SKLIEGTALINKCGTNEVYKPC-------QFYEEYTCWTSSSKMERTRTLSKKFKHCVD 145
SK++E A++ K ++ + K Q + C SK+ +TR+L K+F C+D
Sbjct: 42 SKMLEPKAIVYKKNSSAIPKRVDNILLRSQKPKHIECLLVDSKITKTRSLLKRFGSCLD 100
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -3
Query: 276 LINKCGTNEVYKPCQFYEEYTCWTSSSKMERTRTLSKKFKHCV 148
L + CG + + C F+ EY S S + R + + ++C+
Sbjct: 88 LFSLCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQSRNCI 130
>SPAC12B10.07 |acp1||F-actin capping protein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 24.6 bits (51), Expect = 5.5
Identities = 15/71 (21%), Positives = 35/71 (49%)
Frame = -3
Query: 231 FYEEYTCWTSSSKMERTRTLSKKFKHCVDGCYCDKGLVRSYSKGPCIEAGKCRDKKIEKI 52
+YE+ W +S+ + T+ + K + G+ +S++ +E DKK +++
Sbjct: 178 YYEDGNVWLDASR-PISATVEETSKLYEVLAQVENGIQQSFN----VELSSLNDKKFKEL 232
Query: 51 LDNLPIYKKRI 19
LP+ +++I
Sbjct: 233 RRQLPVTRQKI 243
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 49 KDFFNFFVSTLPRFYTRTFAV*TN 120
KDF F S+L RFY ++ A +N
Sbjct: 683 KDFVTFPTSSLLRFYRKSMATESN 706
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 236 HGLYTSFVPHLFINAVPSINLDANEENKTIPHK 334
+G ++SF+ H+ +NA+ I L + E+ P++
Sbjct: 478 NGPFSSFIYHVKLNAIEHILLSSFEQKLHQPYQ 510
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 24.2 bits (50), Expect = 7.2
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 318 LFSSFASKLIEGTALINKCGTNEV-YKPCQFYEEYTCWTSSSKMERTRT 175
+ S ++ L EG+A+I NEV Y P Q + T+ TR+
Sbjct: 24 MMSGASASLTEGSAIIPFSNPNEVFYNPVQQFNRDLSVTAIRAWSETRS 72
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 23.8 bits (49), Expect = 9.6
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -3
Query: 288 EGTALINKCGTNEVYKPCQFYEEYTCWTSSSKMERTRTLSKKFKHCVDGCYCDKGLVRSY 109
E T+L + + PC+F+ + TC + + + F H ++ +K + + +
Sbjct: 24 EATSLTRPSPKSLQHVPCKFFRQGTCTSGKNCI---------FSHDLE-LATEKTICKYF 73
Query: 108 SKGPCIEAGKC 76
KG C KC
Sbjct: 74 QKGNCKFGSKC 84
>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 23.8 bits (49), Expect = 9.6
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 236 HGLYTSFVPHLFINA--VPSINLDANEENKTIPHKTFIL 346
H L+ SF+ H F N+ +P++ N+T + T +L
Sbjct: 204 HSLFPSFLVHAFCNSMGLPTLYGKIGNRNQTRIYYTLLL 242
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -3
Query: 285 GTALINKCGTNEVYKPCQFYEEYTCWTSSSKME 187
GTA+ CG N P F+ + W K++
Sbjct: 36 GTAIAKICGENAKAHPDIFHPQVHMWMYEEKIQ 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,863
Number of Sequences: 5004
Number of extensions: 29408
Number of successful extensions: 74
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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