Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b15
         (386 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    23   1.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   4.9  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   6.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   6.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   8.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   8.6  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 44  LSRIFSIFLSLHFPASIQGPLLYERTRPLSQ 136
           LS +F +F+  +FP+ I     Y +  P+S+
Sbjct: 34  LSNLFWLFVGTYFPSLIGANEHYSKFFPVSE 64


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 348 CKMKVLWGIVLFSSFASKLIE 286
           CK + LW   + S F+ + IE
Sbjct: 94  CKEEALWNFPMISVFSRQDIE 114


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 54  FFQFFCLYTSPLLYKDLC 107
           +FQ +CL+   L+ K+ C
Sbjct: 17  YFQQYCLHHKILIKKNKC 34


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = -3

Query: 144 GCYCDKGLVRSYSKGPCIEA--GKCRDKKIEKILDNLPIYKK 25
           GC+C  G      K  C E   GK + +      +  P + K
Sbjct: 246 GCHCKPGYQADVEKQECTECPIGKFKHEAGSHSCEACPAHSK 287


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 326 ESFCSPRLHLS*LRAPH 276
           +  CSP+LH+  L   H
Sbjct: 151 QPMCSPKLHVFDLNTSH 167


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 92  IQGPLLYERTRPL 130
           +Q P LY+ T+P+
Sbjct: 567 LQAPSLYDTTKPI 579


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 155 CLNFFDNVLVLSILLDE 205
           CL  F NVLV+  ++ E
Sbjct: 198 CLTLFGNVLVILAVVRE 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,516
Number of Sequences: 438
Number of extensions: 2018
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)