Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b14
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008127-1|AAG32080.1|  359|Caenorhabditis elegans heterotrimeri...    31   0.84 
AF036706-13|AAK39279.2|  359|Caenorhabditis elegans G protein, a...    31   0.84 
Z83319-5|CAB05907.2|  446|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AY008127-1|AAG32080.1|  359|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 359

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -1

Query: 339 ESDIRLLY*HLTAIFKFQV---FYITLMEAMDSVWPYKGVFKSTYRKHDTLIKITATCYF 169
           E D R+   H   +   ++   F + L + M  +W  +GV K   R H+  +  +A  YF
Sbjct: 100 EEDARMFISHFLHVNNAELSEAFSLELSDLMKQLWMDEGVKKCVKRAHEYQLNDSAEYYF 159

Query: 168 NTL 160
           N L
Sbjct: 160 NAL 162


>AF036706-13|AAK39279.2|  359|Caenorhabditis elegans G protein,
           alpha subunit protein 4 protein.
          Length = 359

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -1

Query: 339 ESDIRLLY*HLTAIFKFQV---FYITLMEAMDSVWPYKGVFKSTYRKHDTLIKITATCYF 169
           E D R+   H   +   ++   F + L + M  +W  +GV K   R H+  +  +A  YF
Sbjct: 100 EEDARMFISHFLHVNNAELSEAFSLELSDLMKQLWMDEGVKKCVKRAHEYQLNDSAEYYF 159

Query: 168 NTL 160
           N L
Sbjct: 160 NAL 162


>Z83319-5|CAB05907.2|  446|Caenorhabditis elegans Hypothetical
           protein T02D1.4 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 47  LRYYLKFFHNSNPNEMYTIFFPINISFSKYFGTNGLTISVL 169
           LR    +  +S+ NE+Y +++P  I F   FG   + ++VL
Sbjct: 145 LRIVSAWDSDSHINEIYWVYYPYQIYFVNLFGFCAMWLTVL 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,817,123
Number of Sequences: 27780
Number of extensions: 360471
Number of successful extensions: 829
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)