Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10b13
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561 29 4.3
04_03_0987 - 21460169-21460467,21460934-21461495,21462756-214631... 29 4.3
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 29 4.3
08_02_1560 - 27876886-27877905 29 5.7
02_04_0184 - 20737884-20738179,20738611-20739169,20740009-207404... 29 5.7
07_03_1744 + 29171372-29171438,29172789-29173768 28 7.5
06_03_0147 + 17236158-17236808 28 7.5
03_02_0461 - 8658494-8658876,8659791-8659859,8661746-8662187 28 7.5
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 28 9.9
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594 28 9.9
>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
Length = 495
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 484 ITTESAKQIEKFRKSKSDDCTIIKESKPAETSSG-FKFFKKAETEGKK 344
+ + ++ + + ++ ++ SKP++ SG +K KK + EGKK
Sbjct: 207 VEDKGKSKVNEANDNLEEEIALLARSKPSKKKSGGYKLMKKLKKEGKK 254
>04_03_0987 -
21460169-21460467,21460934-21461495,21462756-21463190,
21463757-21464185
Length = 574
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 345 FLPSVSAFLKNLKPELVSAGLLSLMIVQ 428
F+PS AFL N +PE+V LL +++Q
Sbjct: 149 FVPSALAFLMNGEPEIVKNFLLKTLLLQ 176
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 129 VDLMVANTLPDAGITSGLSSCETSRGGVGTSCGELRPLSRELIIETLE 272
+ +++ NTL G++S TSRG +G CG L P+ +I +
Sbjct: 174 ISIIIFNTL--FGLSSSYWMALTSRGLLGLMCGILGPIKHYFLISVFQ 219
>08_02_1560 - 27876886-27877905
Length = 339
Score = 28.7 bits (61), Expect = 5.7
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +2
Query: 401 GLTFFDDSAVIRFRFSEFFNL-FSALGGDDGHRVVCGLVHFTHEVPDRRLESGPPARLGV 577
G ++D S +RF FSA+G GH V F E ++ P GV
Sbjct: 139 GRAYYDFSPFPGYRFVVLDAYDFSAVGWPRGHPVAAAARRFLDERNPNADKNSPSGLAGV 198
Query: 578 DRPVVTF 598
DR V F
Sbjct: 199 DRRFVMF 205
>02_04_0184 -
20737884-20738179,20738611-20739169,20740009-20740440,
20740556-20740957
Length = 562
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 345 FLPSVSAFLKNLKPELVSAGLLSLMIVQ 428
F+PS AFL N +PE+V LL +++Q
Sbjct: 140 FVPSALAFLMNGEPEIVRHFLLKTLLLQ 167
>07_03_1744 + 29171372-29171438,29172789-29173768
Length = 348
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2
Query: 410 FFDDSAVIRFRFSEFFNL-FSALGGDDGHRVVCGLVHFTHEVPDRRLESGPPARLGVDRP 586
++D S +RF FSALG H V + F E ++ P +GVDR
Sbjct: 159 YYDFSPCPEYRFVVLDAYDFSALGWPRDHPVTAEAMKFLEEKNPNSDKNSPDGLVGVDRR 218
Query: 587 VVTF 598
V F
Sbjct: 219 FVMF 222
>06_03_0147 + 17236158-17236808
Length = 216
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -2
Query: 293 EARRQGGLQRLYDEFSAERSQLSARRAHAAPGRLARA 183
EAR G L+ LY SAE + A R A PG R+
Sbjct: 134 EARELGELEALYPCLSAEVEAVEASRLCAVPGVFRRS 170
>03_02_0461 - 8658494-8658876,8659791-8659859,8661746-8662187
Length = 297
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 248 SAERSQLSARRAHAAPGRLARAEAGRDARVG 156
+AER +L ARR A GR R + +A VG
Sbjct: 3 TAERRRLRARRTGAGGGRRRRGDGREEAAVG 33
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 481 TTESAKQIEKFRK-SKSDDCTIIKESKPAETSSGFKFFKKAETEGKKC 341
TTE+ FR +SD ++ E+ T +K ++ E EGK C
Sbjct: 444 TTETLSVKRAFRAIRRSDVVALVVEAMACITEQDYKIAERIEKEGKAC 491
>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
Length = 622
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 348 LPSVSAFLKNLK-PELVSAGLLSLMIVQSSD-FDFLNFSICLALSVVMTVTASCVVWYTL 521
LP V F L+ PEL +++ S + FL A + + V++ ++W T+
Sbjct: 221 LPKVDRFFAALEGPELDQLKSEEELVLPSDKTWPFLLRFPVSAFGMCLGVSSQAILWKTI 280
Query: 522 LTKSPTAALSLAPR 563
T PTA L + +
Sbjct: 281 ATSGPTAFLHVTTK 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,908,101
Number of Sequences: 37544
Number of extensions: 297944
Number of successful extensions: 1181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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