Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b13
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    31   0.96 
AF038619-6|AAB92077.2|  442|Caenorhabditis elegans Hypothetical ...    29   3.9  

>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -1

Query: 636 PTTPETTLAAIITNVTTGRSTPSRAG 559
           PTT  T+ + +IT  TTG S+PS AG
Sbjct: 409 PTTVMTSRSTVITTPTTGGSSPSTAG 434


>AF038619-6|AAB92077.2|  442|Caenorhabditis elegans Hypothetical
           protein F56A11.6 protein.
          Length = 442

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 393 VSAGLLSLMIVQSSDFDFLNFSICLALSVVMTVTASCVVWYTLLTKSPTAALSLAPRP 566
           +S G+L L+  + S F      I  A++   TVTA C++ + +   +P      AP P
Sbjct: 58  ISIGVLFLLAAKPSMFSSKLGLILCAVAAASTVTAGCLL-FPITATAPKGRAGSAPAP 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,916,721
Number of Sequences: 27780
Number of extensions: 234938
Number of successful extensions: 938
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)