Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b11
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   3.2  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   7.5  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.9  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   9.9  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = +1

Query: 250 EARTYLQILLNKHYYMN*DIRLKTNGLLNVILDSFKSVNKKTNMFNFCFKLC*HNDT 420
           E+R ++ + L++ YY   D +L    ++     SF+ ++ K     F F+L  H+++
Sbjct: 357 ESRLHILLQLSQLYYKYNDFQLSAAYVIRGYSLSFEDISFKLKFLLFSFRLSIHDNS 413


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 186 FTNGWLLRGIKNIKF 142
           F N WL +GI+NI F
Sbjct: 90  FINAWLFKGIENITF 104


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 662  RIASITALAQGPVVDTHVLFGIQENAARWFFPVKPSLAQIHL 537
            RI  +TA  +   +D H+LF  +EN      P++P L  I L
Sbjct: 1068 RIRRMTAWPESDALDKHILF--KENIIP--IPIRPPLVDISL 1105


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 660 PLCKENHSSMVFLREHYWVLHNKPLFPSGVVAASVVHIEVFY 785
           P  +E + ++ FLR  YW L+N P F   +++   +   +FY
Sbjct: 296 PAVQEKYWNVGFLR--YWTLNNIPNFLFALLSIIPILFALFY 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,386,892
Number of Sequences: 5004
Number of extensions: 69873
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)