Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b11
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0242 - 15273774-15274043,15274131-15274235                       32   0.48 
02_03_0408 - 18692176-18692278,18692590-18692669,18692764-186928...    30   2.0  
06_02_0038 + 10865068-10865150,10865249-10865335,10865835-108659...    30   2.6  
04_04_1538 + 34239913-34241274,34241468-34241578                       30   2.6  
03_06_0599 + 34984869-34985319,34986581-34987563                       30   2.6  
03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621     29   3.4  

>11_04_0242 - 15273774-15274043,15274131-15274235
          Length = 124

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 723 CGGPSNVPLEKPCCYDFPCKADCFNHGACT 634
           CGGP  V +  PCCY   C       G C+
Sbjct: 82  CGGPHGVCIPAPCCYAINCNIPNRPFGVCS 111


>02_03_0408 -
           18692176-18692278,18692590-18692669,18692764-18692890,
           18694016-18694051,18695832-18696085
          Length = 199

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 726 YCGGPSNVPLEKPCCYDFPCKADCFNHGACTRPSGRYARTVWYP 595
           Y G P  VPL++    D P    C   GA    S R   T+++P
Sbjct: 50  YAGAPKGVPLQQTMFRDTPAPFHCQACGAAAVSSLRSEDTIFFP 93


>06_02_0038 +
           10865068-10865150,10865249-10865335,10865835-10865936,
           10867000-10870078
          Length = 1116

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 435 LSTFLGIIMLTQLKTKIKHVCFFIHTFKR 349
           L   L + + TQLKTKI+HV    H F R
Sbjct: 710 LHVLLSMALKTQLKTKIEHVPNLFHRFTR 738


>04_04_1538 + 34239913-34241274,34241468-34241578
          Length = 490

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
 Frame = -2

Query: 786 NKRPRCGQPRPQPHQRETTAYCGGPSNVPLEKPCCYDFPCKADCFNHGACTRPSGRYART 607
           N +P    P P P Q+     C   S  P    CC ++  +  C   G C        + 
Sbjct: 379 NPKPSPPSPAPSPPQQ-----CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKD 433

Query: 606 VWYPGECCPVVFP-CQA 559
                 CCP  +P C A
Sbjct: 434 ---HSTCCPKEYPVCNA 447


>03_06_0599 + 34984869-34985319,34986581-34987563
          Length = 477

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = -2

Query: 762 PRPQPHQRETTAYCGGPSNVPLEKPCCYDFPCKADCFNHGA 640
           P P PHQRET      PS  P  +P    FPC  +C   GA
Sbjct: 408 PPPPPHQRET------PSPSPPPQP---QFPCPGNCSRCGA 439


>03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621
          Length = 388

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 762 PRPQPHQRETTAYCGGPSNVPLEK 691
           P P+ H R T +Y G P   PLEK
Sbjct: 180 PPPEAHHRPTKSYTGHPPPPPLEK 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,961,139
Number of Sequences: 37544
Number of extensions: 426019
Number of successful extensions: 997
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)