Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10b11
(829 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D26579-1|BAA05626.1| 824|Homo sapiens transmembrane protein pro... 31 5.1
BC115404-1|AAI15405.1| 824|Homo sapiens ADAM8 protein protein. 31 5.1
AF191687-1|AAF05604.1| 270|Homo sapiens alanine-glyoxylate amin... 31 6.7
AY427820-1|AAR05120.1| 321|Homo sapiens G-protein coupled recep... 30 8.9
AJ583824-1|CAE47751.1| 1072|Homo sapiens ubiquitin specific prot... 30 8.9
AB154410-1|BAD20638.1| 321|Homo sapiens G protein-coupled recep... 30 8.9
AB083627-1|BAB89340.1| 321|Homo sapiens putative G-protein coup... 30 8.9
AB065786-1|BAC06005.1| 347|Homo sapiens seven transmembrane hel... 30 8.9
>D26579-1|BAA05626.1| 824|Homo sapiens transmembrane protein
protein.
Length = 824
Score = 31.1 bits (67), Expect = 5.1
Identities = 10/32 (31%), Positives = 13/32 (40%)
Frame = -2
Query: 669 CKADCFNHGACTRPSGRYARTVWYPGECCPVV 574
C A C NHG C + W P C ++
Sbjct: 613 CSAQCHNHGVCNHKQECHCHAGWAPPHCAKLL 644
>BC115404-1|AAI15405.1| 824|Homo sapiens ADAM8 protein protein.
Length = 824
Score = 31.1 bits (67), Expect = 5.1
Identities = 10/32 (31%), Positives = 13/32 (40%)
Frame = -2
Query: 669 CKADCFNHGACTRPSGRYARTVWYPGECCPVV 574
C A C NHG C + W P C ++
Sbjct: 613 CSAQCHNHGVCNHKQECHCHAGWAPPHCAKLL 644
>AF191687-1|AAF05604.1| 270|Homo sapiens alanine-glyoxylate
aminotransferase homolog protein.
Length = 270
Score = 30.7 bits (66), Expect = 6.7
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = -2
Query: 804 AESSIYNKRPRC-----GQPRPQPHQRETTAYCGGPSNVPLE 694
+E S + RPRC G PRP P Q +T G P+ P E
Sbjct: 90 SEPSSVSPRPRCFLLPWGSPRPCPRQSQTGGSRGSPAPRPAE 131
>AY427820-1|AAR05120.1| 321|Homo sapiens G-protein coupled receptor
protein.
Length = 321
Score = 30.3 bits (65), Expect = 8.9
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = -3
Query: 560 PSLAQIHLTIHVVTIRATDMCKRKSAQTCVSLMSCLCDRLVCYLR---FWVSLC*HSLKQ 390
P + LT+ V R++ +R+ + V +++ + L+C L +W L SL
Sbjct: 192 PVMTLSSLTLFVWVRRSSQQWRRQPTRLFVVVLASVLVFLICSLPLSIYWFVLYWLSLPP 251
Query: 389 KLNMFVFLFTLLKESRMTLSNPLVFSLM 306
++ + F + L S + +NP+++ L+
Sbjct: 252 EMQVLCFSLSRLSSSVSSSANPVIYFLV 279
>AJ583824-1|CAE47751.1| 1072|Homo sapiens ubiquitin specific
proteinase 53 protein.
Length = 1072
Score = 30.3 bits (65), Expect = 8.9
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -3
Query: 644 ALAQGPVVDTHVLFGIQENAARWFFPVKPSLAQIHLTIHVVTIRATDMCKRKSAQTCVSL 465
ALA+ + G+ ++AA F + L +IH H+V R DMC KS T
Sbjct: 101 ALAESFKDEQRFQLGLMDDAAECF---ENMLERIHF--HIVPSRDADMCTSKSCITHQKF 155
Query: 464 MSCLCDRLVC 435
L ++ VC
Sbjct: 156 AMTLYEQCVC 165
>AB154410-1|BAD20638.1| 321|Homo sapiens G protein-coupled receptor
TGR7 protein.
Length = 321
Score = 30.3 bits (65), Expect = 8.9
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = -3
Query: 560 PSLAQIHLTIHVVTIRATDMCKRKSAQTCVSLMSCLCDRLVCYLR---FWVSLC*HSLKQ 390
P + LT+ V R++ +R+ + V +++ + L+C L +W L SL
Sbjct: 192 PVMTLSSLTLFVWVRRSSQQWRRQPTRLFVVVLASVLVFLICSLPLSIYWFVLYWLSLPP 251
Query: 389 KLNMFVFLFTLLKESRMTLSNPLVFSLM 306
++ + F + L S + +NP+++ L+
Sbjct: 252 EMQVLCFSLSRLSSSVSSSANPVIYFLV 279
>AB083627-1|BAB89340.1| 321|Homo sapiens putative G-protein coupled
receptor protein.
Length = 321
Score = 30.3 bits (65), Expect = 8.9
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = -3
Query: 560 PSLAQIHLTIHVVTIRATDMCKRKSAQTCVSLMSCLCDRLVCYLR---FWVSLC*HSLKQ 390
P + LT+ V R++ +R+ + V +++ + L+C L +W L SL
Sbjct: 192 PVMTLSSLTLFVWVRRSSQQWRRQPTRLFVVVLASVLVFLICSLPLSIYWFVLYWLSLPP 251
Query: 389 KLNMFVFLFTLLKESRMTLSNPLVFSLM 306
++ + F + L S + +NP+++ L+
Sbjct: 252 EMQVLCFSLSRLSSSVSSSANPVIYFLV 279
>AB065786-1|BAC06005.1| 347|Homo sapiens seven transmembrane helix
receptor protein.
Length = 347
Score = 30.3 bits (65), Expect = 8.9
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = -3
Query: 560 PSLAQIHLTIHVVTIRATDMCKRKSAQTCVSLMSCLCDRLVCYLR---FWVSLC*HSLKQ 390
P + LT+ V R++ +R+ + V +++ + L+C L +W L SL
Sbjct: 218 PVMTLSSLTLFVWVRRSSQQWRRQPTRLFVVVLASVLVFLICSLPLSIYWFVLYWLSLPP 277
Query: 389 KLNMFVFLFTLLKESRMTLSNPLVFSLM 306
++ + F + L S + +NP+++ L+
Sbjct: 278 EMQVLCFSLSRLSSSVSSSANPVIYFLV 305
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,776,148
Number of Sequences: 237096
Number of extensions: 2524524
Number of successful extensions: 5626
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5619
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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