Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b11
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.85 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   4.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   8.0  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 567 REKPPGSILLDTKQYVRIDHWALCKRRD 650
           R+  P ++LLD++ YV++  +   KR D
Sbjct: 490 RDLKPENLLLDSQGYVKLVDFGFAKRLD 517


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -2

Query: 786 NKRPRCGQPRPQP--HQRETTAYCGGPSNVPLEKP 688
           +++P  G P PQP  HQ       G P N P + P
Sbjct: 13  SQQPSSGAPGPQPSPHQSPQAPQRGSPPN-PSQGP 46


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 619 IRTYCLVSRRMLPGGFSLSSLHLPK 545
           +  Y    R MLP   S S  H+PK
Sbjct: 230 LNAYYYYMREMLPYWMSSSQYHMPK 254


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 619 IRTYCLVSRRMLPGGFSLSSLHLPK 545
           +  Y    R MLP   S S  H+PK
Sbjct: 230 LNAYYYYMREMLPYWMSSSQYHMPK 254


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -1

Query: 208 RQYFSRAFHKRL 173
           R YFSR F KRL
Sbjct: 98  RDYFSRPFEKRL 109


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 508 VARMVTTWMVRWIWASEGLTGKN 576
           +A +V  +++ WIW   G   +N
Sbjct: 165 LAGIVQPFLIHWIWTPHGWMRRN 187


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 250 EARTYLQILLNKHYYMN*DIRLKTNGLLNVILDSFKSVNKKTNMFNFCFKLC 405
           E    L  LL   Y +   + L  NGL+  I  + KS+   +NMF     +C
Sbjct: 42  EPNPSLHYLLALLYILFTFLALLGNGLVIWIFCAAKSLRTPSNMFVVNLAIC 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,345
Number of Sequences: 438
Number of extensions: 5033
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)