Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b09
         (789 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q90XH4 Cluster: Sprouty4; n=4; Clupeocephala|Rep: Sprou...    37   0.66 
UniRef50_Q5ZCA3 Cluster: SIAH1 protein-like; n=4; Oryza sativa|R...    35   2.0  
UniRef50_Q8IJP7 Cluster: Putative uncharacterized protein; n=5; ...    35   2.0  
UniRef50_Q9W5X1 Cluster: CG9572-PA; n=3; Diptera|Rep: CG9572-PA ...    35   2.7  
UniRef50_Q2PC93 Cluster: SCO-spondin precursor; n=4; Eukaryota|R...    35   2.7  
UniRef50_A7RGY8 Cluster: Predicted protein; n=1; Nematostella ve...    34   3.5  
UniRef50_P18753 Cluster: Oocyte zinc finger protein XlCOF8.4; n=...    34   3.5  

>UniRef50_Q90XH4 Cluster: Sprouty4; n=4; Clupeocephala|Rep: Sprouty4
           - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 310

 Score = 36.7 bits (81), Expect = 0.66
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -1

Query: 447 CQECPSCACPSDFNPST-PSMYDCRKYGHCLPSNDLITRFECLPNFPTGIFRCTTGETLG 271
           C++C  C C     P T PS + C +   C   N L+    C+       + CT  +  G
Sbjct: 173 CEKCGKCRCTECTLPRTLPSCWVCNQECLCSAQN-LVDSVTCMCLVKGVFYHCTDEDEEG 231

Query: 270 SGADKGC 250
           S ADK C
Sbjct: 232 SCADKPC 238


>UniRef50_Q5ZCA3 Cluster: SIAH1 protein-like; n=4; Oryza sativa|Rep:
           SIAH1 protein-like - Oryza sativa subsp. japonica (Rice)
          Length = 417

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
 Frame = -1

Query: 423 CPSDFNPSTPSMYDCRKYGH--CLPSNDLITRFECLPN---FPTGIFRCTTGETLGSGAD 259
           CP  F    P ++ C   GH  C P  D +      P+   F T   RC   E + +  +
Sbjct: 39  CPVCFQILRPPVFQC-DLGHLVCSPCRDNLPAGGKCPSPSCFGTPSVRCVAMERVVNSVE 97

Query: 258 KGCCYQ---CPEYFAYQHMTFYDLHLYLRPCRKPSAKTG 151
             C Y    CP+  AY ++T ++      PC  P    G
Sbjct: 98  VACAYAEHGCPDKIAYANITEHEKTCPHAPCFCPEPGCG 136


>UniRef50_Q8IJP7 Cluster: Putative uncharacterized protein; n=5;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 775

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +3

Query: 186 DINANRKKSCADRRNIPDIDNSNLYQ----HHYQESHRWCTEIYQL 311
           +INA ++K+     NI D  N  LY+    H+    H+WC++ YQ+
Sbjct: 717 EINAGQQKNPFLHENIKDSTNYELYKKKKIHYASHIHKWCSKTYQI 762


>UniRef50_Q9W5X1 Cluster: CG9572-PA; n=3; Diptera|Rep: CG9572-PA -
           Drosophila melanogaster (Fruit fly)
          Length = 441

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -1

Query: 468 VETNKETCQECPSCACPSDF--NPSTPSMYDCRKYGHCLPSNDLITRFECLPNFPTGIFR 295
           V T  E     P+C+C   +  NP +   ++C   G C   +   + F+C+P       +
Sbjct: 177 VNTKCEIINGVPTCSCVHGYVGNPLSGCRHECDHDGDCSSRDMCSSNFKCVP----ACGQ 232

Query: 294 CTTGETLGSGADKGCCYQCPE 232
           C TG T  + ++     +CP+
Sbjct: 233 CGTGATCRTVSNHRAVCECPK 253


>UniRef50_Q2PC93 Cluster: SCO-spondin precursor; n=4; Eukaryota|Rep:
            SCO-spondin precursor - Gallus gallus (Chicken)
          Length = 5255

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = -1

Query: 444  QECPSCACPSDFNPSTPSMYDCRKYGHCLPSNDLITRF--ECLPNFPTGIFRCTTGETLG 271
            Q C +C+C +      P+   C    HC P ++   R    C+P    G + C   +  G
Sbjct: 1336 QGCRNCSCTAGLWQCVPTAEPCPAQPHC-PDSEFPCRSGGRCVP----GAWLCDNEDDCG 1390

Query: 270  SGADKGCCYQC 238
             G+D+ C   C
Sbjct: 1391 DGSDEVCALHC 1401


>UniRef50_A7RGY8 Cluster: Predicted protein; n=1; Nematostella
            vectensis|Rep: Predicted protein - Nematostella vectensis
          Length = 1627

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = -1

Query: 462  TNKETCQECPSCACPSDFNPSTPSMYD----CRKYGHCLPSNDLITRFECLPNFPTGIFR 295
            T+K   ++CP C   + F        D    C KY +C   +D +    C PNF    FR
Sbjct: 1271 TDKSDEEDCPPCK-ENQFRCDNGQCIDGDPRCDKYKNCTDGSDELGCATCEPNF----FR 1325

Query: 294  CTTGETLGS 268
            C TG+ + +
Sbjct: 1326 CNTGKCISA 1334


>UniRef50_P18753 Cluster: Oocyte zinc finger protein XlCOF8.4; n=19;
           Xenopus|Rep: Oocyte zinc finger protein XlCOF8.4 -
           Xenopus laevis (African clawed frog)
          Length = 780

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
 Frame = -1

Query: 450 TCQECPSCAC-PSDFNP-----STPSMYDCRKYGHCLPSNDLITRFECLPNFPTGIFRCT 289
           +C EC  C    SDFN      +    Y C + G C P++ ++T            +R  
Sbjct: 675 SCSECGKCFTRSSDFNVHRRTHTGEKPYSCSECGRCFPTSSVLTSH----------WRTH 724

Query: 288 TGETLGSGADKGCCYQCPEYFAYQHMT 208
           TGE   S  + G C+    Y  Y H T
Sbjct: 725 TGEKPFSCTECGKCFSRETYLKYHHRT 751


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 679,190,177
Number of Sequences: 1657284
Number of extensions: 13268547
Number of successful extensions: 28062
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28046
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)