Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b09
         (789 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    26   0.30 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       24   1.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.5  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -2

Query: 446 VKNVLLAPALVISTHQLQACT 384
           +K  LLA AL+ISTHQ +A T
Sbjct: 3   LKLCLLASALLISTHQTEAKT 23


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 402 STPSMYDCRKYGHCLPSNDLITRFECLPNF 313
           S PS+  C ++GHC+    +  R +C P F
Sbjct: 33  SAPSI--CGEHGHCVNLPGVGHRCQCQPGF 60


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 188 ILGPAGNLALKREENLENHQPHHLE 114
           +LGP G+  L  +    +H  HH++
Sbjct: 148 VLGPTGSPPLTTQSMNNHHMGHHMQ 172



 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -2

Query: 155 REENLENHQPHH 120
           +E++ ++HQPHH
Sbjct: 172 QEQHPQHHQPHH 183


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 188 ILGPAGNLALKREENLENHQPHHLE 114
           +LGP G+  L  +    +H  HH++
Sbjct: 150 VLGPTGSPPLTTQSMNNHHMGHHMQ 174



 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -2

Query: 155 REENLENHQPHH 120
           +E++ ++HQPHH
Sbjct: 174 QEQHPQHHQPHH 185


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 360 LPSNDLITRFECLPN 316
           L   DL  RFECL N
Sbjct: 32  LDDRDLWLRFECLTN 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,806
Number of Sequences: 336
Number of extensions: 3749
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)