Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b08
         (803 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.           25   0.53 
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    25   0.53 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.6  
AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochr...    22   6.6  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   8.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.7  

>S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.
          Length = 35

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -1

Query: 314 QQKTENLKTCFLNLKQSFPTVESANNLSLVE 222
           +Q+T++L   F +L++S PT+ S + LS ++
Sbjct: 6   RQRTQSLNEAFASLRKSIPTMPS-DKLSKIQ 35


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -1

Query: 314 QQKTENLKTCFLNLKQSFPTVESANNLSLVE 222
           +Q+T++L   F +L++S PT+ S + LS ++
Sbjct: 106 RQRTQSLNEAFASLRKSIPTMPS-DKLSKIQ 135


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +1

Query: 73   QSVLGRAVWQGESLRMNLISDSAMFAGVGVEHSSRDFTIQEVISSTFAHFSTRLKLLADS 252
            + +L   V  G S++    SDSA+F  V       D T   +I          LK+L  S
Sbjct: 849  EEILANGVLSGLSIKRTERSDSALFTCVATNAFGSDDTSINMIVQEVPEVPYGLKVLDKS 908


>AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q2 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 74  NLSWAERCGKESL 112
           NL + ERC KESL
Sbjct: 44  NLKYLERCIKESL 56


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 403 TVPINSSTLCATRTETG 353
           T+ INS T+C T +  G
Sbjct: 146 TMEINSDTMCVTFSNLG 162


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 30  VMALVLTERSLTVQSIC 80
           ++ALV+ E + TV +IC
Sbjct: 199 LVALVVNENNTTVNNIC 215


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,591
Number of Sequences: 336
Number of extensions: 3734
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)