Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b07
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067949-8|AAX88812.1|  565|Caenorhabditis elegans Peroxisomal m...    28   5.4  
AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal m...    28   5.4  
AF067949-6|AAC19238.1|  598|Caenorhabditis elegans Peroxisomal m...    28   5.4  
AC024211-8|AAF36062.1|  832|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF067949-8|AAX88812.1|  565|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform c protein.
          Length = 565

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -1

Query: 554 NNRLDNNVFHFVLILFCATRICDVLL 477
           + ++ NN F+F+ ++ C TR+ D+ +
Sbjct: 306 SGQISNNAFYFIYLINCFTRLTDLAM 331


>AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform b protein.
          Length = 626

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -1

Query: 554 NNRLDNNVFHFVLILFCATRICDVLL 477
           + ++ NN F+F+ ++ C TR+ D+ +
Sbjct: 306 SGQISNNAFYFIYLINCFTRLTDLAM 331


>AF067949-6|AAC19238.1|  598|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform a protein.
          Length = 598

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -1

Query: 554 NNRLDNNVFHFVLILFCATRICDVLL 477
           + ++ NN F+F+ ++ C TR+ D+ +
Sbjct: 306 SGQISNNAFYFIYLINCFTRLTDLAM 331


>AC024211-8|AAF36062.1|  832|Caenorhabditis elegans Hypothetical
           protein Y76B12C.1 protein.
          Length = 832

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 257 QNITPCIGQDNLNCINIISYNYVRISKRVVSH*YWFNSD 373
           +NI   I  D  N I   SYN V   KRV +    FNS+
Sbjct: 771 ENIIDSIDTDLANMITSFSYNSVAYKKRVTALENIFNSN 809


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,962,109
Number of Sequences: 27780
Number of extensions: 260447
Number of successful extensions: 521
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)