Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10b05
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 193 3e-50
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 185 6e-48
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 136 3e-33
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 122 5e-29
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc... 118 1e-27
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 83 5e-17
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 44 2e-05
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 31 0.27
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.48
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 29 0.63
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 29 1.1
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 28 1.9
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.9
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 27 2.6
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 27 4.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.5
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 27 4.5
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 26 5.9
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 26 5.9
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb... 26 5.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.9
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 26 7.8
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 193 bits (470), Expect = 3e-50
Identities = 107/256 (41%), Positives = 152/256 (59%), Gaps = 2/256 (0%)
Frame = -2
Query: 851 YGNEKEVGEAIXSKIKEGVVTREDLFITSKLWNTFHRPDLVRGALQETLDNLNVQYLDLY 672
YGNE EVG+ I KE V R+D+++TSKLW H P+ V AL++TL +L + YLD Y
Sbjct: 60 YGNEDEVGDGI----KESGVPRKDIWVTSKLWCNAHAPEAVPKALEKTLKDLKLDYLDEY 115
Query: 671 LIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSNFNSKQLE 492
LIHWP ++K FP D+ G + + +TWKAME L++ G V+ IG+SNFN LE
Sbjct: 116 LIHWPVSFKTGEDKFPKDKDGNLIYEKNPIEETWKAMEKLLETGKVRHIGLSNFNDTNLE 175
Query: 491 RLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKPDDPQLME 312
R+L+ A VKP V+Q+E HP+L Q E + G+ +TAYSP G+ + + + P+L+E
Sbjct: 176 RILKVAKVKPAVHQMELHPFLPQTEFVEKHKKLGIHVTAYSPFGNQNTIY-ESKIPKLIE 234
Query: 311 DPKLKAIADRLGK--TVAQVLIRYQIDSGNIVIPKSVTRSRIASNFDVLDFKLSREDVAL 138
++ IA G+ T A + + + I G VIPKSV RI SNF + L++ED+
Sbjct: 235 HETIQKIAKSKGEGVTGATIAVSWAITRGTSVIPKSVNEQRIKSNFKYI--PLTKEDMDE 292
Query: 137 IDSFDCGGRLVPMTAS 90
I+S R T S
Sbjct: 293 INSIGIRARFNQATFS 308
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 185 bits (451), Expect = 6e-48
Identities = 97/226 (42%), Positives = 142/226 (62%), Gaps = 2/226 (0%)
Frame = -2
Query: 851 YGNEKEVGEAIXSKIKEGVVTREDLFITSKLWNTFHRPDLVRGALQETLDNLNVQYLDLY 672
YGNEKE+GE I +E V R D+++TSKLW HR LV AL++TL +LN++Y+D Y
Sbjct: 59 YGNEKEIGEGI----RESGVPRTDIWVTSKLWCNAHRAGLVPLALEKTLQDLNLEYIDAY 114
Query: 671 LIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSNFNSKQLE 492
LIHWP A P ++ G++ + DV +TW+AME L++ G V+ IG+SNFN++ L+
Sbjct: 115 LIHWPFALLSGPEELPRNEKGELIYEDVPIEETWQAMEELLETGKVRYIGISNFNNEYLD 174
Query: 491 RLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKPDDPQLME 312
R+L+ A VKP ++Q+E HPYL Q E + + ++AYSPL + + + D +L+E
Sbjct: 175 RVLKIAKVKPTIHQMELHPYLPQTEYLEKHKKLQIHVSAYSPLANQNDAY-NSDISKLIE 233
Query: 311 DPKLKAIADRLGK--TVAQVLIRYQIDSGNIVIPKSVTRSRIASNF 180
L IA+ G+ T A + I + + G V+PKSV SRI SNF
Sbjct: 234 HKTLVDIANARGEGITPANIAISWAVKRGTSVLPKSVNESRIVSNF 279
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 136 bits (330), Expect = 3e-33
Identities = 81/244 (33%), Positives = 135/244 (55%), Gaps = 1/244 (0%)
Frame = -2
Query: 851 YGNEKEVGEAIXSKIKEGVVTREDLFITSKLWNTFHRPDLVRGALQETLDNLNVQYLDLY 672
Y NE + G AI ++E RED++ TSKL N ++ ++ + Y+DL+
Sbjct: 50 YHNEADCGRAILKFMEETGTKREDIWFTSKL-NDLSGYKSTLSSIDASVKACGLGYIDLF 108
Query: 671 LIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSNFNSKQLE 492
L+H P D +++WKA+E V+EG +++IGVSNF ++
Sbjct: 109 LLHSPYG---------------------DRIESWKALEKGVEEGKLRAIGVSNFGPHHIQ 147
Query: 491 RLLQ-HATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKPDDPQLM 315
LL H + P VNQ+E HP+ +Q+++ ++CE++G+++ AY+PL ++
Sbjct: 148 ELLDSHPKIIPCVNQIELHPFCSQQKVVDYCESKGIQLAAYAPLVHGEK----------F 197
Query: 314 EDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASNFDVLDFKLSREDVALI 135
+ +L AIA + K+ AQ++IRY + G IV+PKS T RI N DV DF++S+ED+ +
Sbjct: 198 GNKQLLAIASKYNKSEAQIMIRYCLQRGFIVLPKSSTPRRIKENGDVFDFEISKEDMEKL 257
Query: 134 DSFD 123
+ D
Sbjct: 258 YNLD 261
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 122 bits (295), Expect = 5e-29
Identities = 84/244 (34%), Positives = 126/244 (51%), Gaps = 1/244 (0%)
Frame = -2
Query: 851 YGNEKEVGEAIXSKIKEGVVTREDLFITSKLWNTFHRPDLVRGALQETLDNLNVQYLDLY 672
YGNE G+AI ++ V R D+F+TSKL N R A++ +L +L Y+DL+
Sbjct: 55 YGNEDICGKAIVDWCEKNNVKRTDIFLTSKLANCSDYYS-TRAAIRSSLHHLGT-YIDLF 112
Query: 671 LIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSNFNSKQLE 492
LI P K+ + +WKAME V G ++S+GVSN+ K L+
Sbjct: 113 LIQSPAGGKKSR------------------IASWKAMEEFVDSGDIRSVGVSNYGVKHLQ 154
Query: 491 RLL-QHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKPDDPQLM 315
L + P VNQ+E HP+L+Q + ++C++ + I AYSPL R +
Sbjct: 155 ELYASNPKFYPCVNQIELHPFLSQDDIVKYCQSHDIAIEAYSPLTHGIR----------L 204
Query: 314 EDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASNFDVLDFKLSREDVALI 135
D KL IA +L +VAQ+LIR+ + G I I KS + + S+ DV +F + + V +
Sbjct: 205 NDEKLVPIAKKLNISVAQLLIRWSLQKGYIPIIKSTKKEHMLSDLDVFNFTIPDDVVQEL 264
Query: 134 DSFD 123
SFD
Sbjct: 265 SSFD 268
>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
reductase AKR3C2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 284
Score = 118 bits (284), Expect = 1e-27
Identities = 89/240 (37%), Positives = 120/240 (50%), Gaps = 4/240 (1%)
Frame = -2
Query: 851 YGNEKEVGEAIXSKIKEGVVTREDLFITSKLWNTFHRPDLVRGALQETLDNLNVQYLDLY 672
YGNE+EVG A+ KE V R LFITSK+ H D + AL E+L L YLDLY
Sbjct: 54 YGNEEEVGVAL----KEANVPRSKLFITSKV---MHNVDNIPEALNESLRKLGTDYLDLY 106
Query: 671 LIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSNFNSKQLE 492
L+H P + E KI S+ WKAME + GLV S+GVSNF LE
Sbjct: 107 LLHSPIPFYEK----------KIPISE-----GWKAMETALGTGLVHSVGVSNFRIPDLE 151
Query: 491 RLLQHATVKPVVNQVECHP--YLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKPDDPQL 318
LL+ +T+ P VNQ+E HP Y K L EFC+++G+ + Y PL R D Q
Sbjct: 152 ELLKTSTITPRVNQIEFHPQVYKAAKPLVEFCQSKGIIVEGYGPLSPLVR------DAQG 205
Query: 317 MEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVI--PKSVTRSRIASNFDVLDFKLSREDV 144
K++ + + Q+L+++ G I I + R + NFD F L + D+
Sbjct: 206 PVAEFTKSLESKYHVSDTQILLKWAYSKGVIPITTTSKIERMKECLNFD--SFTLDKADI 263
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 83.0 bits (196), Expect = 5e-17
Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 1/244 (0%)
Frame = -2
Query: 851 YGNEKEVGEAIXSKIKEGV-VTREDLFITSKLWNTFHRPDLVRGALQETLDNLNVQYLDL 675
Y NEKE +AI + V + RED+ + +K+ ++ + A++++L LD+
Sbjct: 47 YRNEKECEQAIQDFCHQNVNIKREDITLITKIPDSLQGFERTWKAVEQSLRRTGRPKLDV 106
Query: 674 YLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSNFNSKQL 495
LIH P+ +P V +++W+A+ KEG + IGVSN+N L
Sbjct: 107 VLIHSPK--------WP-----------VRRIESWRALLQHQKEGRINKIGVSNYNIHHL 147
Query: 494 ERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKPDDPQLM 315
E ++ P +NQVE + N+ +C G+ + A+SPL R +
Sbjct: 148 EEIISLGLPLPAINQVEFSAFNNRPTFLSYCFNHGILVQAFSPLTRGYR----------L 197
Query: 314 EDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASNFDVLDFKLSREDVALI 135
D +L ++ + KT A +L+RY + G I K+ + I N F L D+ ++
Sbjct: 198 SDIRLLDLSLKYNKTPANILLRYCLQKGVSPIFKASSFVHIHENVKAEQFMLDPSDMDVM 257
Query: 134 DSFD 123
D++D
Sbjct: 258 DTWD 261
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -2
Query: 584 YVDTWKAMEPLVKEGLVKSIGVSNFNSKQLERLLQHATVKPVVNQV 447
+VDTWK +E V EG + ++GVS F +L+RL+ V P Q+
Sbjct: 158 WVDTWKLLEEKVGEGKIGTLGVSEFGVNELQRLISSVNVVPESTQI 203
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 30.7 bits (66), Expect = 0.27
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
Frame = -2
Query: 746 HRPDLVRGALQETLDNLNVQYLDLYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWK 567
+ PD + AL +L L + +DLY +H SG+ +
Sbjct: 99 NEPDYIEKALDLSLKRLGIDCIDLYYVH--------------RFSGETPIEKI-----MG 139
Query: 566 AMEPLVKEGLVKSIGVSNFNSKQLERLLQHATVKPV-VNQVECHPY-LNQKR----LKEF 405
A++ V+ G ++ IG+S ++ + R A V PV QVE P+ L +R + +
Sbjct: 140 ALKKCVEAGKIRYIGLSECSANTIRRA---AAVYPVSAVQVEYSPFSLEIERPEIGVMKA 196
Query: 404 CEARGVKITAYSPLG 360
C + I Y+PLG
Sbjct: 197 CRENNITIVCYAPLG 211
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 29.9 bits (64), Expect = 0.48
Identities = 24/71 (33%), Positives = 34/71 (47%)
Frame = -3
Query: 667 YTGPRPTRKTALSSRPTNQVKSSSRTSITWTPGRLWSRSSKRVWSRASESPTSTRSSWRG 488
Y+G + A S T S TS + TP S SS S +S+S +S++SS
Sbjct: 123 YSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSS 182
Query: 487 CCSTRLSSRSS 455
S++ SS SS
Sbjct: 183 SSSSKSSSSSS 193
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/60 (31%), Positives = 37/60 (61%)
Frame = -3
Query: 643 KTALSSRPTNQVKSSSRTSITWTPGRLWSRSSKRVWSRASESPTSTRSSWRGCCSTRLSS 464
K++ SS+ ++ SSS++S + + S SS S++S SP+S++SS + S+ ++S
Sbjct: 171 KSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSS-SKSSASPSSSKSSSKFSSSSFITS 229
Score = 25.8 bits (54), Expect = 7.8
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -3
Query: 664 TGPRPTRKTALSSRPTNQVKSSSRTSITWTPGRLWSRSSKRVWSRASESPTSTRSSWRGC 485
T T ++ SS ++ SSS++S + S SSK S +S S +S+ SS
Sbjct: 148 TSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSK 207
Query: 484 CSTRLSSRSS 455
S SS S
Sbjct: 208 SSASPSSSKS 217
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 29.5 bits (63), Expect = 0.63
Identities = 20/87 (22%), Positives = 35/87 (40%)
Frame = -2
Query: 572 WKAMEPLVKEGLVKSIGVSNFNSKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFCEAR 393
W ++EP+V + V G+ N K++ + + + + LK++ ++
Sbjct: 798 WSSLEPMVLDIDVNFHGIKVVNGKEINLISSQGLKRVDCASIRRENFKPDITLKDYVDSF 857
Query: 392 GVKITAYSPLGSPDRPWAKPDDPQLME 312
T PLG D PD QL E
Sbjct: 858 KPTNTVIKPLGDRD---IMPDGQQLFE 881
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 425 QKRLKEFCEARGVKITAYSPLGSPDRPWAKP 333
Q++L +F + GVK P+ +P + W KP
Sbjct: 72 QRKLDDFLQNHGVKSLDVPPIETPSQFWRKP 102
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = -3
Query: 637 ALSSRPTNQVKSSSRTSITWTPGRLWSRSSKRVWSRASESPTSTRSS 497
A SS T+ V SSS+ S + + L S SS + S +S SPTS+ SS
Sbjct: 75 ASSSFITSLVSSSSQQSSS-SSASLTSSSSATLTSSSSASPTSSSSS 120
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = -2
Query: 773 ITSKLWNTFHRPDLVRGALQET----LDNLNV-QYLDLYLIH 663
+ S+ W T H+ L RGAL E +DN V +Y+ Y I+
Sbjct: 640 VISRTWKTAHKNKLQRGALPEDEGSGVDNFRVKRYVSKYTIN 681
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -2
Query: 776 FITSKLWNTFHRPDLVRGALQETLDNLNVQYLDLYLIHW 660
+ + + + R +L++ L E L + LD+Y +HW
Sbjct: 123 YFSKEYLTAYRRSELLQNKLHEYQKKLITRVLDMYQLHW 161
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 27.5 bits (58), Expect = 2.6
Identities = 7/23 (30%), Positives = 17/23 (73%)
Frame = -2
Query: 614 SGKIQFSDVDYVDTWKAMEPLVK 546
S +++F+ +DY+ W+A+ P+ +
Sbjct: 162 SQRVEFARLDYIKVWRALAPIYR 184
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 631 SSRPTNQVKSSSRTSITWTPGRLWSRSSK 545
SS+ ++ VK +S S TWTP L SK
Sbjct: 321 SSKHSSPVKGNSSISSTWTPSNLKIYHSK 349
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.5
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -3
Query: 640 TALSSRPTNQVKSSSRTSITWTPGRLWSRSSKRVWSRASESPTSTRSSWRGCCSTRLSSR 461
++LSS P N + + ++ + T + S SS S +S +P S+ S+ S+R SS
Sbjct: 710 SSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSS-SSSSYTPASSTSTTTSSVSSRQSSS 768
Query: 460 SS 455
SS
Sbjct: 769 SS 770
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = -2
Query: 512 FNSKQLERLLQHATVKPVVNQVECHPYLNQKRLK 411
F + RL+ T+K ++ +V +PYL ++ ++
Sbjct: 327 FKGLDVRRLISFGTIKGLIYRVHKYPYLERRTMR 360
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 111 PTAAVERVDEGDVLPGELEVEHVKVARDPTPRHGL 215
PT VE + PGE H+K+ P + GL
Sbjct: 875 PTFTVESSQPFSLSPGERREIHIKIRAKPNSQEGL 909
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 658 PRPTRKTALSSRPTNQVKSSSRTSITWTPGRLWSRSSKRVWSRASESPTSTRS 500
P P + T +S +PT + ++ R S++ SR+S R S ++ S S+ S
Sbjct: 528 PSPLQNTVISPQPTRRSRTPIR-SLSGRSSVASSRNSSRTRSYSNVSSASSNS 579
>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 776 FITSKLWNTFHRPDLVRGALQETLDNLNVQYLDLYLIHWPQAYKEDGSL 630
F+ S FHR V GAL L ++ L L + Q ++ D SL
Sbjct: 97 FLKSPRMGEFHRESFVEGAL--NLSTTSLDQLKLAIKEKVQVWRSDASL 143
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = -3
Query: 640 TALSSRPTNQVKSSSRTSITWTPGRLWSRSSKRVWSRASESPTS-TRSSWRGCCSTRLSS 464
++++ PT+ + S+S +S T + S+ + + S+ PT+ T S +T +
Sbjct: 345 SSIALNPTSSISSTSSSSSTSSAISTISQDHTKTVTSVSDEPTTITASGATSVTTTTKTD 404
Query: 463 RSSIRWNVILTST 425
++ ++ TST
Sbjct: 405 FDTVTTTIVSTST 417
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Frame = -2
Query: 344 WAKPDDPQLMEDPKL-----KAIADRLGKTVAQVLIRYQ 243
W++ +D +L+ KL + IA +G+T Q L RYQ
Sbjct: 61 WSREEDEKLLHLAKLLPTQWRTIAPIVGRTATQCLERYQ 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,299,989
Number of Sequences: 5004
Number of extensions: 68528
Number of successful extensions: 292
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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