Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b05
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   1.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   1.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.2  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 25/94 (26%), Positives = 40/94 (42%)
 Frame = -1

Query: 696 ERSVLGSVPDTLAPGLQGRRLSLPDRPIR*NPVLGRRLRGHLEGYGAARQRGSGQEHRSL 517
           ++S+LGS+  +L+   + RR    D  +  N      +    E   +     SG E  S 
Sbjct: 7   DQSLLGSIARSLSLDRRARR-GAADLSLAGNATKVNTVH---EEESSLNDLFSGPEESSG 62

Query: 516 QLQLEAAGEVAAARDCQAGRQSGGMSSLPQPETP 415
            ++L    + AAA    +    GG SS P P +P
Sbjct: 63  GVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSP 96


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 662 SVSGTDPSTERSDCPGSPAGHRAPSPGDETCSTVSKL*TDLPSLR 796
           S SG +  TE+ D P S +   AP+    +  +  K   D+P L+
Sbjct: 578 SDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVEDMPVLK 622



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -3

Query: 574 PGRLWSRSSKRVWSRASESPTSTRSSWRGCCSTRLSS 464
           P   W  +S      A +SP  + SS    CS  ++S
Sbjct: 470 PAASWGSASDVTLDEAVKSPLGSVSSTESTCSGEVAS 506


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 254 IRYQIDSGNIVIPKSV 207
           +R  IDSGN++ P+ V
Sbjct: 350 LRDAIDSGNVITPQGV 365


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 395  RGVKITAYSPLGSPDRPWAKPDDPQLMED 309
            RG    A + +G P R W K    Q+  D
Sbjct: 1328 RGSATLACNAVGDPTREWYKGQGEQIRTD 1356


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 395  RGVKITAYSPLGSPDRPWAKPDDPQLMED 309
            RG    A + +G P R W K    Q+  D
Sbjct: 1324 RGSATLACNAVGDPTREWYKGQGEQIRTD 1352


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 360 LAGQTLGQARRPPAHGGPQTEGHR*QTREDCRPGPHQ 250
           L G+T+G     P     +TE  + +T++   P  +Q
Sbjct: 518 LKGETVGLLNALPPSSMKETEEEKKKTKQSLSPSENQ 554


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,510
Number of Sequences: 438
Number of extensions: 4664
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)