Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b02
         (252 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I3G3 Cluster: Putative uncharacterized protein PFE152...    32   2.1  
UniRef50_Q0QJ92 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    31   6.4  

>UniRef50_Q8I3G3 Cluster: Putative uncharacterized protein PFE1525w;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFE1525w - Plasmodium falciparum
           (isolate 3D7)
          Length = 970

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = +1

Query: 1   ILNHMVMVLIYDSAVT*FQMKFILVYYFFLRIR*QLIYIRFASIYFKRSEFVSERSDFVK 180
           ++ + +++ I  S ++ F   FIL+YY F  I+   +Y  F   Y K  +      + + 
Sbjct: 653 LITYHILLRICLSFISLFIYSFILLYYMFFMIKDVYVYFSFYMKYIKEKKKQKGNDELIY 712

Query: 181 LHFTVSFVK 207
            ++   ++K
Sbjct: 713 KYYFYYYIK 721


>UniRef50_Q0QJ92 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=1; Xenos vesparum|Rep: NADH-ubiquinone oxidoreductase
           chain 5 - Xenos vesparum
          Length = 540

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 64  FILVYYFFLRIR*QLIYIRFASIYFKRSEFVSE 162
           F +++YFF  +   L Y+   ++YF+ S F+ E
Sbjct: 442 FKIIFYFFFMLGILLSYVNMKNLYFQSSMFIGE 474


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,696,719
Number of Sequences: 1657284
Number of extensions: 2750717
Number of successful extensions: 4019
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4019
length of database: 575,637,011
effective HSP length: 62
effective length of database: 472,885,403
effective search space used: 9930593463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)