Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b02
         (252 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    25   2.0  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   8.2  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    23   8.2  

>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -1

Query: 171 VRTFGNEFTTLKVNTCKPNVY*LSSNPQKK 82
           VRTFGN    L +N   PN   L  N QKK
Sbjct: 251 VRTFGNFADILVINVSSPNTPGL-RNLQKK 279


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 67  ILVYYFFLRIR*QLIYIRFASIYFKRSEFVSERSDFVKLHFTVSF 201
           +L+++FFL       +  F+ ++F    F+   S F  LHF   F
Sbjct: 116 LLLFFFFLLFFLSFSF-SFSFLFFLSQIFIVYFSSFPILHFLFFF 159


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 7   NHMVMVLIYDSAVT*FQMKFILVYYFFLRI 96
           +H++ +L+Y +       ++  +YYF +RI
Sbjct: 36  SHLLFLLVYVTRYLNLFWRYKSLYYFLMRI 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 896,241
Number of Sequences: 5004
Number of extensions: 13954
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)