Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b02
         (252 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1525 - 34156813-34157058,34157245-34157435,34157885-341579...    25   6.4  
05_05_0024 + 21613199-21613208,21613466-21613560,21613656-216137...    25   8.4  
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757...    25   8.4  

>04_04_1525 -
           34156813-34157058,34157245-34157435,34157885-34157956,
           34158351-34158419,34158531-34158639,34158872-34158987,
           34159117-34159210,34159289-34159460,34159545-34159669
          Length = 397

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 79  YFFLRIR*QLIYIRFASIYFKRSEFVS-ERSDFVKLHFTVSFVKLLHSIII 228
           +F L    ++ Y  F S+      F    R+D++K+HF  S+ +  H +I+
Sbjct: 118 FFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHFAESWNEFHHLLIM 168


>05_05_0024 +
           21613199-21613208,21613466-21613560,21613656-21613713,
           21613843-21614037,21614237-21614316,21614402-21614512
          Length = 182

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/31 (25%), Positives = 21/31 (67%)
 Frame = +1

Query: 4   LNHMVMVLIYDSAVT*FQMKFILVYYFFLRI 96
           L+++++ L+Y   +   Q KF++ +Y++L +
Sbjct: 14  LSYLLLALVYGPVLLHRQRKFLMPWYWYLAL 44


>01_06_0969 -
           33472588-33474480,33475543-33475623,33475692-33475740,
           33475866-33476281,33477208-33477447
          Length = 892

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 74  TNINFI*NYVTAESYISTITIW 9
           T ++ I  YV+AE Y S + +W
Sbjct: 783 TYLSLINGYVSAEKYFSVLILW 804


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,772,096
Number of Sequences: 37544
Number of extensions: 61406
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)