Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b02
         (252 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    22   3.0  
Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein...    21   5.2  
AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    21   5.2  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    21   5.2  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    21   5.2  
AJ439060-12|CAD27763.1|  450|Anopheles gambiae putative tachykin...    21   6.9  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 251 ETICILV*IIIECNNLTKLTVKCNFTKSERSETNSLRLK*ILA 123
           +T+   V +II C  ++ LT+   +  S+  E  SL +  +L+
Sbjct: 238 KTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLS 280


>Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein
           protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 20  WY*YMTPLLRNFK*NLY*YTTFFCG 94
           +Y  + P++RNFK  L   T  F G
Sbjct: 193 YYKAIGPVIRNFKLTLTYVTLLFAG 217


>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 251 ETICILV*IIIECNNLTKLTVKCNFTKSERSETNSLRLK*ILANL 117
           +T+   V +II C  +T LTV   +  S+  E  +L +  IL +L
Sbjct: 244 KTLFYTVNLIIPCVGITFLTVLVFYLPSDSGEKVTLCIS-ILVSL 287


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 251 ETICILV*IIIECNNLTKLTVKCNFTKSERSETNSLRLK*ILA 123
           +T+   V III C  ++ LTV   +  S+  E  +L +  +++
Sbjct: 242 KTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILIS 284


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 251 ETICILV*IIIECNNLTKLTVKCNFTKSERSETNSLRLK*ILA 123
           +T+   V III C  ++ LTV   +  S+  E  +L +  +++
Sbjct: 242 KTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILIS 284


>AJ439060-12|CAD27763.1|  450|Anopheles gambiae putative tachykinin
           receptor protein.
          Length = 450

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 13  MVMVLIYDSAVT*FQMKFILVYYF 84
           M++V+I+      FQ+ FIL  Y+
Sbjct: 300 MIVVIIFAVCWLPFQIYFILTSYY 323


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,138
Number of Sequences: 2352
Number of extensions: 3055
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 53
effective length of database: 439,323
effective search space used: 13179690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)