Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b02
         (252 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-11|AAB69874.1|  192|Caenorhabditis elegans Hypothetical...    26   4.1  
AF040657-6|AAB95051.2|  261|Caenorhabditis elegans Hypothetical ...    25   7.1  
Z81526-7|CAB04266.2|  330|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AF022967-11|AAB69874.1|  192|Caenorhabditis elegans Hypothetical
           protein C13A2.2 protein.
          Length = 192

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 227 IIIECNNLTKLTVKCNFTKSERSETNSLRLK*ILANLMYINC 102
           I+    N+ + +V C +    R E ++     I+A +  INC
Sbjct: 94  IVTTSENIDRKSVNCRYYDCNRQEISNSAFNTIVAPMAVINC 135


>AF040657-6|AAB95051.2|  261|Caenorhabditis elegans Hypothetical
           protein T20H9.2 protein.
          Length = 261

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 142 RSEFVSERSDFVKLHFTVSFVKL 210
           R E+ S R+D++  HFT    KL
Sbjct: 41  RREWRSYRNDYIDRHFTTELAKL 63


>Z81526-7|CAB04266.2|  330|Caenorhabditis elegans Hypothetical
           protein F33H2.8 protein.
          Length = 330

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 76  YYFFLRIR*QLIYIRFASIYFKRSEFVSERSDFVKLHFTVSFVKLLH 216
           YYF L +    +     ++ F   +     + F +  FT  F+KL+H
Sbjct: 41  YYFLLELASAFVLSAAHNVLFFVLDIKLIATSFAQFFFTFIFLKLIH 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,776,355
Number of Sequences: 27780
Number of extensions: 73304
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)