Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10b02
(252 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 0.78
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 1.0
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 1.8
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 1.8
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 21 2.4
DQ435325-1|ABD92640.1| 160|Apis mellifera OBP7 protein. 20 4.2
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 20 4.2
DQ435324-1|ABD92639.1| 152|Apis mellifera OBP3 protein. 19 7.3
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 19 9.6
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 19 9.6
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 19 9.6
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.6 bits (46), Expect = 0.78
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 251 ETICILV*IIIECNNLTKLTVKCNFTKSERSETNSLRLK*ILA 123
+T+ V +II C ++ LTV + S+ E SL + +L+
Sbjct: 239 KTLFYTVNLIIPCMGISFLTVLVFYLPSDSGEKVSLSISILLS 281
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.2 bits (45), Expect = 1.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 251 ETICILV*IIIECNNLTKLTVKCNFTKSERSETNSL 144
+T+ V +II C +T LTV + S+ E SL
Sbjct: 248 KTLFYTVNLIIPCVGITFLTVLVFYLPSDSGEKVSL 283
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 1.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -2
Query: 251 ETICILV*IIIECNNLTKLTVKCNFTKSERSETNSLRLK*ILA 123
+T+ V III C ++ LTV + S+ E +L + +++
Sbjct: 243 KTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILIS 285
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 1.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -2
Query: 251 ETICILV*IIIECNNLTKLTVKCNFTKSERSETNSLRLK*ILA 123
+T+ V III C ++ LTV + S+ E +L + +++
Sbjct: 243 KTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILIS 285
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 21.0 bits (42), Expect = 2.4
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 9 PYGYGTNI*-LRCYVISNEIYISILLFFA 92
P+ +G I LR YV Y+S+L A
Sbjct: 99 PWQWGLGICKLRAYVSETSSYVSVLTIVA 127
>DQ435325-1|ABD92640.1| 160|Apis mellifera OBP7 protein.
Length = 160
Score = 20.2 bits (40), Expect = 4.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 251 ETICILV*IIIECNNLTKLTVKC 183
+ I I V ++ EC N K T KC
Sbjct: 106 KNISIDVKMLSECINANKSTDKC 128
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 20.2 bits (40), Expect = 4.2
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 251 ETICILV*IIIECNNLTKLTVKCNFTKSERSETNSLR 141
+TIC II + +T+ + CN + S++ +S +
Sbjct: 341 QTICCKTRIIGRRSWVTRESQICNNSSSDKERNSSFK 377
>DQ435324-1|ABD92639.1| 152|Apis mellifera OBP3 protein.
Length = 152
Score = 19.4 bits (38), Expect = 7.3
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = -2
Query: 248 TICILV*IIIECNNLT 201
T+CI+ +++ C+++T
Sbjct: 10 TLCIVSYMMVRCDDIT 25
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 19.0 bits (37), Expect = 9.6
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +1
Query: 79 YFFLRIR*QLIYI 117
Y +LR++ Q++YI
Sbjct: 291 YSYLRLKGQMLYI 303
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 19.0 bits (37), Expect = 9.6
Identities = 6/9 (66%), Positives = 9/9 (100%)
Frame = -1
Query: 249 NDLHFSLNY 223
N+L+F+LNY
Sbjct: 54 NELNFNLNY 62
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 19.0 bits (37), Expect = 9.6
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +1
Query: 79 YFFLRIR*QLIYI 117
Y +LR++ Q++YI
Sbjct: 291 YSYLRLKGQMLYI 303
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,544
Number of Sequences: 438
Number of extensions: 991
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used: 4527252
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
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