Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10b01
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 106 2e-23
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 106 2e-23
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 103 2e-22
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 103 2e-22
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 100 1e-21
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 99 4e-21
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 92 4e-19
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 71 2e-12
01_01_0181 - 1548392-1548466,1548689-1549379,1549475-1549604,154... 29 4.6
12_02_0330 - 17612867-17613161,17613376-17613459,17613554-176137... 29 6.1
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 28 8.0
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 106 bits (255), Expect = 2e-23
Identities = 53/66 (80%), Positives = 56/66 (84%), Gaps = 2/66 (3%)
Frame = -1
Query: 836 LNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDG--ESA 663
LNSPDRAC LAK AFD+AI+ELDTL EESYKDSTLIMQLLRDNLTLWTSDMQ DG E
Sbjct: 196 LNSPDRACTLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGGDEMR 255
Query: 662 DAEQKE 645
DA + E
Sbjct: 256 DATKPE 261
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 106 bits (254), Expect = 2e-23
Identities = 52/69 (75%), Positives = 54/69 (78%)
Frame = -1
Query: 836 LNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESADA 657
LNSPDRAC LAK AFDDAIAELDTL EESYKDSTLIMQLLRDNLTLWTSD DG
Sbjct: 191 LNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEDGGDEIK 250
Query: 656 EQKEPAQDG 630
E +P +G
Sbjct: 251 EAAKPEGEG 259
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 103 bits (247), Expect = 2e-22
Identities = 49/70 (70%), Positives = 54/70 (77%)
Frame = -1
Query: 836 LNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESADA 657
LNSPDRAC LAK AFD+AI+ELD+L EESYKDSTLIMQLLRDNLTLWTSD DG
Sbjct: 169 LNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLRDNLTLWTSDANDDGGDEIK 228
Query: 656 EQKEPAQDGE 627
E P + G+
Sbjct: 229 EAAAPKEPGD 238
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 103 bits (246), Expect = 2e-22
Identities = 50/71 (70%), Positives = 59/71 (83%)
Frame = -1
Query: 836 LNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESADA 657
LNSPDRAC LAK AFD+AI+ELDTLSEESYKDSTLIMQLLRDNLTLWTSD+ D +A+
Sbjct: 192 LNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISED--TAEE 249
Query: 656 EQKEPAQDGED 624
++ P +D +
Sbjct: 250 IREAPKRDSSE 260
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 100 bits (240), Expect = 1e-21
Identities = 49/71 (69%), Positives = 56/71 (78%), Gaps = 1/71 (1%)
Frame = -1
Query: 836 LNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGD-GESAD 660
LNSPD+AC LAK AFD+AI+ELDTL EESYKDSTLIMQLLRDNLTLWTSD+ D G+
Sbjct: 186 LNSPDKACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEVK 245
Query: 659 AEQKEPAQDGE 627
K A +G+
Sbjct: 246 EASKGDACEGQ 256
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 99.1 bits (236), Expect = 4e-21
Identities = 46/51 (90%), Positives = 49/51 (96%)
Frame = -1
Query: 836 LNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDM 684
LNSPDRAC LAK AFD+AI+ELDTLSEESYKDSTLIMQLLRDNLTLWTSD+
Sbjct: 410 LNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDI 460
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 92.3 bits (219), Expect = 4e-19
Identities = 41/56 (73%), Positives = 49/56 (87%)
Frame = -1
Query: 836 LNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGE 669
+NSPD+AC+LAK AFD+A+AEL +LSEE+YKDSTLIMQLLRDNL LW SDM D +
Sbjct: 176 MNSPDKACQLAKNAFDEAVAELPSLSEENYKDSTLIMQLLRDNLALWNSDMADDAD 231
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 70.5 bits (165), Expect = 2e-12
Identities = 31/59 (52%), Positives = 44/59 (74%)
Frame = -1
Query: 836 LNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESAD 660
+NSP+RA ++AK A D+A AE+++ E YKDS L+MQLL++NL LWTS++ G S D
Sbjct: 165 MNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSELTGGETSKD 223
>01_01_0181 -
1548392-1548466,1548689-1549379,1549475-1549604,
1549704-1549884
Length = 358
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 607 HYETSWSSPSCAGSFCSASADSPSPCMSEV 696
H + S S+ + AGS +A+A P PC SE+
Sbjct: 214 HIDPSPSTSTSAGSTAAAAAFQPLPCFSEL 243
>12_02_0330 -
17612867-17613161,17613376-17613459,17613554-17613744,
17614085-17614995,17615081-17615252,17615337-17615412,
17615515-17615634,17615841-17616005,17616096-17616186,
17616644-17616785,17616848-17617042,17617132-17617185,
17617299-17617397,17618181-17618296,17618376-17618442
Length = 925
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 561 KSQPAVPTRGPGTALSLFVFDYGKYIICNI-ILWYCILTVV 442
+S P V PG + LFVFD K+ +C + +L YC++ V
Sbjct: 864 RSTPFVDGACPGISCPLFVFD--KFWVCFVEVLSYCMICPV 902
>03_06_0448 - 34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -1
Query: 812 RLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDN--LTLWTSDMQGDGESADAEQKEPA 639
RL + ++ AE+ E + + + + N + T+ +Q +GE +A K+ A
Sbjct: 1039 RLTRTGVEEKHAEITQEQENEFDNGVMETSKVSVNGAMPYSTASIQSEGEQKEASDKDMA 1098
Query: 638 QDGEDQDV 615
+ +QD+
Sbjct: 1099 EKQSNQDI 1106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,780,979
Number of Sequences: 37544
Number of extensions: 333752
Number of successful extensions: 950
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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