Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b01
         (836 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ250916-1|CAB91840.1|  435|Anopheles gambiae serine protease pr...    24   6.6  
CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.           23   8.7  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   8.7  
AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.       23   8.7  
AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.       23   8.7  
AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.       23   8.7  

>AJ250916-1|CAB91840.1|  435|Anopheles gambiae serine protease
           protein.
          Length = 435

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 171 LPQVHNLNLAQRYDYRSS 224
           +P+VH LN A+R   R S
Sbjct: 56  IPKVHRLNFAERKQQRQS 73


>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 478 TYDILSIIENEQ*EGGPGPAGRHC 549
           T+  + I ++E  EGGPG   R C
Sbjct: 352 TFQTMWISKHEYDEGGPGIVHRKC 375


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 794 FDDAIAELDTLSEESYKDSTLIMQLLRD-NLTLWTSDMQGDGE 669
           FDD + +     EE   D TLI + L D + ++  S  + DG+
Sbjct: 334 FDDDVGDRLESEEEDSTDETLIEEELTDTDSSMCDSTNEDDGD 376


>AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 794 FDDAIAELDTLSEESYKDSTLIMQLLRD-NLTLWTSDMQGDGE 669
           FDD + +     EE   D TLI + L D + ++  S  + DG+
Sbjct: 104 FDDDVGDRLESEEEDSTDETLIEEELTDTDSSMCDSTNEDDGD 146


>AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.
          Length = 215

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 794 FDDAIAELDTLSEESYKDSTLIMQLLRD-NLTLWTSDMQGDGE 669
           FDD + +     EE   D TLI + L D + ++  S  + DG+
Sbjct: 110 FDDDVGDRLESEEEDSTDETLIEEELTDTDSSMCDSTNEDDGD 152


>AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 794 FDDAIAELDTLSEESYKDSTLIMQLLRD-NLTLWTSDMQGDGE 669
           FDD + +     EE   D TLI + L D + ++  S  + DG+
Sbjct: 104 FDDDVGDRLESEEEDSTDETLIEEELTDTDSSMCDSTNEDDGD 146


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 676,693
Number of Sequences: 2352
Number of extensions: 12002
Number of successful extensions: 52
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88478514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)