Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10b01
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical pr...    99   3e-21
Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    98   6e-21
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    98   6e-21
U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily ass...    29   3.1  
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.      29   4.1  
AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog ...    29   4.1  
Z81017-8|CAC70094.2|  988|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z81017-7|CAB02673.2| 1040|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U39761-1|AAC46934.1| 1040|Caenorhabditis elegans EGL-15 protein.       28   7.2  
AY288941-1|AAP44084.1|  987|Caenorhabditis elegans EGL-15 protein.     28   7.2  

>Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical
           protein F52D10.3a protein.
          Length = 248

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 46/59 (77%), Positives = 52/59 (88%)
 Frame = -1

Query: 836 LNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESAD 660
           LN+PD+AC+LAK AFDDAIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD   D   A+
Sbjct: 184 LNAPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDAATDDTDAN 242


>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 98.3 bits (234), Expect = 6e-21
 Identities = 44/63 (69%), Positives = 54/63 (85%)
 Frame = -1

Query: 836 LNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESADA 657
           LN+P+ AC+LAK AFDDAIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD+  + +  + 
Sbjct: 183 LNTPEHACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDVGAEDQEQEG 242

Query: 656 EQK 648
            Q+
Sbjct: 243 NQE 245


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 98.3 bits (234), Expect = 6e-21
 Identities = 44/63 (69%), Positives = 54/63 (85%)
 Frame = -1

Query: 836 LNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESADA 657
           LN+P+ AC+LAK AFDDAIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD+  + +  + 
Sbjct: 183 LNTPEHACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDVGAEDQEQEG 242

Query: 656 EQK 648
            Q+
Sbjct: 243 NQE 245


>U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 52 protein.
          Length = 665

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
 Frame = -1

Query: 797 AFDDAIAELDTLSEESYKDSTLIM-----QLLRDNL-TLWTSDMQGDGESADAEQKEPAQ 636
           A D+A    DTL +ES+K  +LI      Q  RD L  + T+DM G+  S    +K+PA 
Sbjct: 352 AIDNAKKLRDTLRKESFKQKSLIFDKGFWQRNRDKLRNMITADMTGN-ISRVLTRKKPAP 410

Query: 635 DGEDQD 618
             E+ D
Sbjct: 411 KLEESD 416


>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
           protein F09E8.3 protein.
          Length = 1369

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 758 EESYKDSTLIMQLLRDNLTLWTSDMQGDGESADAEQKEPAQDGEDQD 618
           E+ Y+D T       D +  W S +    +   AE++E  +D +D D
Sbjct: 136 EKIYEDGTTEEGTSEDTVPTWDSSLAYSTDETTAEKEEKEEDEDDDD 182


>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
          Length = 1369

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 758 EESYKDSTLIMQLLRDNLTLWTSDMQGDGESADAEQKEPAQDGEDQD 618
           E+ Y+D T       D +  W S +    +   AE++E  +D +D D
Sbjct: 136 EKIYEDGTTEEGTSEDTVPTWDSSLAYSTDETTAEKEEKEEDEDDDD 182


>AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog
           protein.
          Length = 933

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 758 EESYKDSTLIMQLLRDNLTLWTSDMQGDGESADAEQKEPAQDGEDQD 618
           E+ Y+D T       D +  W S +    +   AE++E  +D +D D
Sbjct: 136 EKIYEDGTTEEGTSEDTVPTWDSSLAYSTDETTAEKEEKEEDEDDDD 182


>Z81017-8|CAC70094.2|  988|Caenorhabditis elegans Hypothetical
           protein F58A3.2b protein.
          Length = 988

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 225 RTIGSRNVVLG*GYALEEVFIERAEDVRSNTFHRRRSG*R 106
           R + +RNV++G G+ L+      + DV  N ++R+R   R
Sbjct: 744 RDLAARNVLVGDGHVLKISDFGLSRDVHCNDYYRKRGNGR 783


>Z81017-7|CAB02673.2| 1040|Caenorhabditis elegans Hypothetical
           protein F58A3.2a protein.
          Length = 1040

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 225 RTIGSRNVVLG*GYALEEVFIERAEDVRSNTFHRRRSG*R 106
           R + +RNV++G G+ L+      + DV  N ++R+R   R
Sbjct: 796 RDLAARNVLVGDGHVLKISDFGLSRDVHCNDYYRKRGNGR 835


>U39761-1|AAC46934.1| 1040|Caenorhabditis elegans EGL-15 protein.
          Length = 1040

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 225 RTIGSRNVVLG*GYALEEVFIERAEDVRSNTFHRRRSG*R 106
           R + +RNV++G G+ L+      + DV  N ++R+R   R
Sbjct: 796 RDLAARNVLVGDGHVLKISDFGLSRDVHCNDYYRKRGNGR 835


>AY288941-1|AAP44084.1|  987|Caenorhabditis elegans EGL-15 protein.
          Length = 987

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 225 RTIGSRNVVLG*GYALEEVFIERAEDVRSNTFHRRRSG*R 106
           R + +RNV++G G+ L+      + DV  N ++R+R   R
Sbjct: 743 RDLAARNVLVGDGHVLKISDFGLSRDVHCNDYYRKRGNGR 782


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,887,777
Number of Sequences: 27780
Number of extensions: 275525
Number of successful extensions: 837
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)