Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a24
         (292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    28   0.24 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   0.97 
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    26   1.3  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   1.7  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    24   5.2  
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         23   6.9  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    23   6.9  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    23   9.1  
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    23   9.1  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    23   9.1  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 28.3 bits (60), Expect = 0.24
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 19  KVHTGVSLLSSSLHDWCMTASCAQKYRVH 105
           K + G+++  +   +W + + C++KYR H
Sbjct: 155 KTNKGIAIPDAETFEWLVCSECSEKYRDH 183


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 0.97
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 126  NILEGSRMHPILLRARCCHTP 64
            N  EG   HP+LLR    HTP
Sbjct: 2072 NASEGLLKHPLLLRNNLIHTP 2092


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1317

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 134  DSVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTFTKPEE 3
            ++VTYS    C R   + +  ++Q C   +    P   F KP E
Sbjct: 1038 EAVTYSAIIYCLRVLISENIPLNQGCLLPIKVIIPDNCFLKPSE 1081


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = -3

Query: 131  SVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTFTKPEE 3
            ++TYS    C R     D  +++ C   +    P   F  P E
Sbjct: 1021 AITYSSVIYCLRSIINQDIPLNEGCLKPIEIRIPPSCFLNPSE 1063


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +1

Query: 43  LSSSLHDWCMTASCAQ--KYRVHSASFEYVTESKGRTPSNSLM*QP*RPLNLS 195
           L+S+L++  +  S     K + +S+S    +ES+G+T SN+    P +  NLS
Sbjct: 41  LNSNLNEKSVEESSKNETKEQFNSSSIPRESESEGKTASNTSPLSPKKVENLS 93


>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 75

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 40  LLSSSLHDWCMTASCAQKYRVHS 108
           +  SSL D+C+ A   Q+Y   S
Sbjct: 9   IYGSSLADYCLNAKYGQRYATFS 31


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 52  SLHDWCMTASCAQKYRVHSASFEYVTES 135
           S   WC+ A+C    R HS + + +  +
Sbjct: 430 SPESWCILANCFSLQREHSQALKCINRA 457


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 124 HTRRKQNAPDTSAR 83
           HT+R +NAP TS +
Sbjct: 178 HTKRSKNAPKTSPK 191


>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 25  HTGVSLLSSSLHDWCMTASCAQKYRVHSASFEY 123
           +T +++L  ++ ++C  ASC Q       S+EY
Sbjct: 63  YTQINMLYGTITEFCTAASCPQMNA--GPSYEY 93


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 140 PFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSS 39
           P+D   Y+ EAE       HDA   Q  K ++ +
Sbjct: 103 PYDPEQYAAEAEADAALLEHDAHWGQRIKHKVDN 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,194,367
Number of Sequences: 5004
Number of extensions: 21895
Number of successful extensions: 56
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)