Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10a24
(292 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0227 + 42144437-42144446,42145059-42145428,42145528-421456... 30 0.36
03_03_0060 - 14157352-14158851 27 1.9
07_03_1242 + 25113464-25114150 27 3.3
01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126... 27 3.3
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 26 4.4
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900... 26 4.4
05_04_0395 - 20921606-20921869,20921971-20922112,20922206-209223... 26 4.4
01_01_0638 - 4819365-4819685,4819702-4819882,4820018-4820073,482... 26 4.4
06_03_0920 - 25942515-25942772,25944186-25944248,25944358-259444... 26 5.8
11_04_0134 - 13812569-13812699,13814167-13814565,13814890-138149... 25 7.7
10_06_0130 - 11055305-11055593,11055666-11055949,11057271-110573... 25 7.7
>01_07_0227 +
42144437-42144446,42145059-42145428,42145528-42145649,
42145767-42145935,42146236-42146545,42146742-42146825,
42147012-42147083,42147780-42147821,42147931-42148020,
42148106-42148213,42148292-42148384,42148540-42148619,
42148701-42148953,42151222-42151236
Length = 605
Score = 29.9 bits (64), Expect = 0.36
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 170 CYIREFDGVLPFDSVTYSKEAECTRYFCAH 81
C I+ + +L + SK A+C RYFC H
Sbjct: 182 CLIKMLEEILERAAEISSKLAQCDRYFCGH 211
>03_03_0060 - 14157352-14158851
Length = 499
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -3
Query: 170 CYIREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTP 30
C++R DGV+P +S T E CT + V SC E+ +DTP
Sbjct: 251 CFVRSGDGVVP-ESTTTGMEL-CT--IGGNGGVSVGSCWREIVADTP 293
>07_03_1242 + 25113464-25114150
Length = 228
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -3
Query: 143 LPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTFTKP 9
LP V Y C + C+ D IH++C D + DT F P
Sbjct: 35 LPITGVGY----RCNHHHCS-DFTIHEACADRFARDTIHGFFAHP 74
>01_03_0278 - 14509481-14509506,14510700-14512291,14512547-14512638,
14513030-14514412
Length = 1030
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 275 SLKTLVFCVCVTLASAAIQRSALEPIPDKFNGLQGCYIRE 156
SL L C C +LAS+++ S P ++ LQG I E
Sbjct: 960 SLVKLTLCYCKSLASSSLPNS-----PQAYSSLQGLIIME 994
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 223 IAAEAKVTQTQKTSVFNDML 282
+A EAK T+ Q+ V+NDM+
Sbjct: 352 VATEAKETRHQREKVYNDMM 371
>10_05_0085 -
9005539-9005922,9006207-9006463,9006707-9006883,
9007349-9007490,9007814-9007904,9009024-9010942
Length = 989
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 111 FLRVCYRIKGKDTIELPDVTALK 179
+++ C + KGK T+E+P T +K
Sbjct: 928 YIQKCKKAKGKKTLEIPIKTTIK 950
>05_04_0395 -
20921606-20921869,20921971-20922112,20922206-20922330,
20922758-20923984
Length = 585
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -3
Query: 290 FVTNMSLKTLVFCVCVTLASAAIQRSALEPIPDKFNGL 177
F+T + ++FC A + A E +P +F GL
Sbjct: 428 FLTQRTKSKIIFCTAAKSAETLFRYIAPEQVPVQFGGL 465
>01_01_0638 -
4819365-4819685,4819702-4819882,4820018-4820073,
4820107-4820148,4820484-4820639,4820681-4820809,
4821072-4821254,4821374-4821524,4821670-4821848
Length = 465
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 281 NMSLKTLVFCVCVTLASAAIQRSALE 204
+M LK L+FC+C+ L S I ++LE
Sbjct: 342 SMLLKKLIFCMCI-LCSDMITHTSLE 366
>06_03_0920 -
25942515-25942772,25944186-25944248,25944358-25944477,
25944628-25944780,25945591-25945692
Length = 231
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 51 IFTRLVYDSIVRAEVSGAFCFLRVCYRIKGKDTIELPDVTAL 176
+F +V D IVR E G F Y ++ KD L V+ +
Sbjct: 6 LFGEVVMDGIVRVEPMGGFDGTATAYYLQCKDCGSLGSVSLI 47
>11_04_0134 -
13812569-13812699,13814167-13814565,13814890-13814981,
13815241-13815446,13815559-13815651,13815779-13815835,
13815928-13816056,13819704-13820024
Length = 475
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 224 IQRSALEPIPDKFNGLQGCYIREFDGVLPFDSVTYSKEA 108
+Q S +E + K C +REF+G ++ Y A
Sbjct: 275 LQASRVEILKTKNGQFSSCMLREFNGTYKYNGEEYDAAA 313
>10_06_0130 -
11055305-11055593,11055666-11055949,11057271-11057398,
11058522-11058606,11058917-11060872
Length = 913
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2
Query: 180 PSRLLHQGVRWCPS 139
PSRL +G+RWCPS
Sbjct: 784 PSRLA-EGLRWCPS 796
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,062,773
Number of Sequences: 37544
Number of extensions: 155025
Number of successful extensions: 397
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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