Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10a24
(292 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68879-7|CAA93088.2| 207|Caenorhabditis elegans Hypothetical pr... 28 1.3
AF010241-1|AAB65419.1| 207|Caenorhabditis elegans glutathione S... 28 1.3
Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical pr... 27 3.0
Z50794-6|CAA90659.2| 388|Caenorhabditis elegans Hypothetical pr... 27 3.0
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr... 26 3.9
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr... 26 3.9
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p... 26 3.9
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr... 26 3.9
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ... 26 3.9
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ... 26 3.9
AC084153-3|AAK84595.1| 153|Caenorhabditis elegans Hypothetical ... 26 3.9
AL132860-1|CAB60513.2| 616|Caenorhabditis elegans Hypothetical ... 26 5.2
Z72514-5|CAA96679.5| 818|Caenorhabditis elegans Hypothetical pr... 25 6.8
U40953-6|AAB52651.1| 809|Caenorhabditis elegans Hypothetical pr... 25 6.8
AY305834-1|AAR11979.1| 327|Caenorhabditis elegans nuclear recep... 25 6.8
AF083228-1|AAD03686.1| 415|Caenorhabditis elegans nuclear recep... 25 6.8
AC006810-4|AAT68890.1| 425|Caenorhabditis elegans Nuclear hormo... 25 6.8
AC006810-3|AAF59634.2| 414|Caenorhabditis elegans Nuclear hormo... 25 6.8
Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p... 25 9.1
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr... 25 9.1
Z47356-2|CAA87415.1| 252|Caenorhabditis elegans Hypothetical pr... 25 9.1
U41556-1|AAK39189.1| 379|Caenorhabditis elegans Cysteine protea... 25 9.1
L39939-1|AAA98789.1| 379|Caenorhabditis elegans cathepsin B-lik... 25 9.1
L39894-1|AAA98787.1| 379|Caenorhabditis elegans cathepsin B-lik... 25 9.1
AF098999-4|AAC68729.1| 659|Caenorhabditis elegans Hypothetical ... 25 9.1
>Z68879-7|CAA93088.2| 207|Caenorhabditis elegans Hypothetical
protein K08F4.11 protein.
Length = 207
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -3
Query: 194 DKFNGLQGCYIREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTF 18
+KF+ L+ + +L D +S+ RY + Q+ ++EL +D V TF
Sbjct: 37 EKFSQLKPTFPSGQVPILCIDGAQFSQSTAIARYLARKFGFVGQTAEEELQADEVVDTF 95
>AF010241-1|AAB65419.1| 207|Caenorhabditis elegans glutathione
S-transferase protein.
Length = 207
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -3
Query: 194 DKFNGLQGCYIREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTF 18
+KF+ L+ + +L D +S+ RY + Q+ ++EL +D V TF
Sbjct: 37 EKFSQLKPTFPSGQVPILCIDGAQFSQSTAIARYLARKFGFVGQTAEEELQADEVVDTF 95
>Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical
protein F54F11.2 protein.
Length = 1589
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = -3
Query: 188 FNGLQGCYIREFDGVLPFDSVTYSKEA 108
F + C + E+ G P D TY A
Sbjct: 691 FTNMAQCVVNEYSGFCPLDKATYGSAA 717
>Z50794-6|CAA90659.2| 388|Caenorhabditis elegans Hypothetical
protein F59F5.5 protein.
Length = 388
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/38 (28%), Positives = 15/38 (39%)
Frame = -3
Query: 200 IPDKFNGLQGCYIREFDGVLPFDSVTYSKEAECTRYFC 87
I K L CY G PF + K + C ++C
Sbjct: 204 IERKHENLHYCYALMHKGYKPFGQEVFKKSSTCEGHYC 241
>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 122 YSKEAECTRYFCAHDAVIHQS-CKDELSSDTPVCTFTK 12
Y + E ++ A D ++ Q C+DE SSD V T K
Sbjct: 310 YKSDTETCQFTVATDDLVDQEHCEDEKSSDRMVDTVEK 347
>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 122 YSKEAECTRYFCAHDAVIHQS-CKDELSSDTPVCTFTK 12
Y + E ++ A D ++ Q C+DE SSD V T K
Sbjct: 310 YKSDTETCQFTVATDDLVDQEHCEDEKSSDRMVDTVEK 347
>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 122 YSKEAECTRYFCAHDAVIHQS-CKDELSSDTPVCTFTK 12
Y + E ++ A D ++ Q C+DE SSD V T K
Sbjct: 310 YKSDTETCQFTVATDDLVDQEHCEDEKSSDRMVDTVEK 347
>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 122 YSKEAECTRYFCAHDAVIHQS-CKDELSSDTPVCTFTK 12
Y + E ++ A D ++ Q C+DE SSD V T K
Sbjct: 310 YKSDTETCQFTVATDDLVDQEHCEDEKSSDRMVDTVEK 347
>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 122 YSKEAECTRYFCAHDAVIHQS-CKDELSSDTPVCTFTK 12
Y + E ++ A D ++ Q C+DE SSD V T K
Sbjct: 310 YKSDTETCQFTVATDDLVDQEHCEDEKSSDRMVDTVEK 347
>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 122 YSKEAECTRYFCAHDAVIHQS-CKDELSSDTPVCTFTK 12
Y + E ++ A D ++ Q C+DE SSD V T K
Sbjct: 310 YKSDTETCQFTVATDDLVDQEHCEDEKSSDRMVDTVEK 347
>AC084153-3|AAK84595.1| 153|Caenorhabditis elegans Hypothetical
protein Y22D7AL.6 protein.
Length = 153
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 108 CFLRVCYRIKGKDTIELPDVTALKAIKFIRDWL 206
CF ++ Y+I+ K TIE DV + F WL
Sbjct: 103 CFDKLIYQIEKKSTIEKIDVYQCRKCIFHSCWL 135
>AL132860-1|CAB60513.2| 616|Caenorhabditis elegans Hypothetical
protein Y56A3A.2 protein.
Length = 616
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 152 DGVLPFDSVTYSKEAECTRYFCAHDAVIHQ 63
D LP+ V +E + T+Y C H + Q
Sbjct: 433 DDALPYGGVAQPEEKKITKYSCLHARYVVQ 462
>Z72514-5|CAA96679.5| 818|Caenorhabditis elegans Hypothetical
protein T10B10.7 protein.
Length = 818
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = -3
Query: 158 EFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSC 57
E+ G+ P +++ E + C A +HQ C
Sbjct: 180 EYYGLSPLHQAIVNEDLEMVYFLCRKGADVHQRC 213
>U40953-6|AAB52651.1| 809|Caenorhabditis elegans Hypothetical
protein F53B1.8 protein.
Length = 809
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 182 GLQGCYIREFDGVLPFDSVTYSKEAE 105
G+ Y EFDG +P + TYSK+ E
Sbjct: 571 GVDSAY-PEFDGSIPDYNATYSKDPE 595
>AY305834-1|AAR11979.1| 327|Caenorhabditis elegans nuclear receptor
NHR-13 protein.
Length = 327
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 149 GVLPFDSVTYSKEAECTRYFCAHDAVIHQS 60
G+ FD + Y+ C R CA D VI+ +
Sbjct: 130 GMPGFDEMNYADSVFCYRLVCAVDFVINSA 159
>AF083228-1|AAD03686.1| 415|Caenorhabditis elegans nuclear receptor
NHR-13 protein.
Length = 415
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 149 GVLPFDSVTYSKEAECTRYFCAHDAVIHQS 60
G+ FD + Y+ C R CA D VI+ +
Sbjct: 218 GMPGFDEMNYADSVFCYRLVCAVDFVINSA 247
>AC006810-4|AAT68890.1| 425|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 13, isoform b protein.
Length = 425
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 149 GVLPFDSVTYSKEAECTRYFCAHDAVIHQS 60
G+ FD + Y+ C R CA D VI+ +
Sbjct: 217 GMPGFDEMNYADSVFCYRLVCAVDFVINSA 246
>AC006810-3|AAF59634.2| 414|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 13, isoform a protein.
Length = 414
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 149 GVLPFDSVTYSKEAECTRYFCAHDAVIHQS 60
G+ FD + Y+ C R CA D VI+ +
Sbjct: 217 GMPGFDEMNYADSVFCYRLVCAVDFVINSA 246
>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
protein F02E9.4b protein.
Length = 1507
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 118 RRKQNAPDTSARTMLSYTNRVKM 50
RRK N+ DTS +L YT K+
Sbjct: 1010 RRKNNSTDTSPHLILEYTPERKV 1032
>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical protein
F02E9.4a protein.
Length = 1505
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 118 RRKQNAPDTSARTMLSYTNRVKM 50
RRK N+ DTS +L YT K+
Sbjct: 1010 RRKNNSTDTSPHLILEYTPERKV 1032
>Z47356-2|CAA87415.1| 252|Caenorhabditis elegans Hypothetical
protein T15H9.2 protein.
Length = 252
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 194 QGLAPKQSAGSPPKLK*R-KHRRLAFSTT 277
QGL P SAG PK K R ++RR+ + T
Sbjct: 51 QGLCPVGSAGIDPKSKFRTEYRRIVNANT 79
>U41556-1|AAK39189.1| 379|Caenorhabditis elegans Cysteine protease
related protein6, isoform a protein.
Length = 379
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 272 LKTLVFCVCVTLASAAIQRSALEPIPDKF 186
+KTL+F C+ +A+ LE + DK+
Sbjct: 1 MKTLLFLSCIVVAAYCACNDNLESVLDKY 29
>L39939-1|AAA98789.1| 379|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 379
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 272 LKTLVFCVCVTLASAAIQRSALEPIPDKF 186
+KTL+F C+ +A+ LE + DK+
Sbjct: 1 MKTLLFLSCIVVAAYCACNDNLESVLDKY 29
>L39894-1|AAA98787.1| 379|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 379
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 272 LKTLVFCVCVTLASAAIQRSALEPIPDKF 186
+KTL+F C+ +A+ LE + DK+
Sbjct: 1 MKTLLFLSCIVVAAYCACNDNLESVLDKY 29
>AF098999-4|AAC68729.1| 659|Caenorhabditis elegans Hypothetical
protein W04C9.6 protein.
Length = 659
Score = 25.0 bits (52), Expect = 9.1
Identities = 25/90 (27%), Positives = 37/90 (41%)
Frame = +1
Query: 22 VHTGVSLLSSSLHDWCMTASCAQKYRVHSASFEYVTESKGRTPSNSLM*QP*RPLNLSGI 201
VH GVSL++ SL S ++ V E + E K + P R + L+ +
Sbjct: 198 VHAGVSLVTFSLFFLFFKCSPSEHSWVGEKELERIREGKSGKKVSRPKNLPFRHI-LTSL 256
Query: 202 GSKAERWIAAEAKVTQTQKTSVFNDMLVTN 291
A WIA+ + Q S FN + N
Sbjct: 257 SLWA-CWIASFGDLITVQLVSQFNPQYMKN 285
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,720,999
Number of Sequences: 27780
Number of extensions: 125745
Number of successful extensions: 292
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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