Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a24
         (292 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   1.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   4.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   4.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   5.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   7.1  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    19   9.4  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    19   9.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                19   9.4  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -3

Query: 164 IREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTF 18
           +R FD +  F    YS     T     +   +H+S K+ L  D   CTF
Sbjct: 77  LRLFDKIRVFLDEDYSSAEHFTAL--GNFYFVHESLKNVLLWDFQECTF 123



 Score = 19.8 bits (39), Expect = 7.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 193 INLMAFKAVTSGSSMVSFPLIL*HTRRK 110
           IN+  F   ++  +M +FP +   TRR+
Sbjct: 177 INIHLFHDASNFIAMETFPSVYSKTRRR 204


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = -3

Query: 146 VLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTFTKPE 6
           +L  D+  Y+ +    +      A +  S  + LSS   +   TKPE
Sbjct: 509 ILSMDNTQYNLDLSLPQLDSTELADLDISLSENLSSGLSISDSTKPE 555


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 291 IRDQHVVENASLLCLRHFSFGGD 223
           IR+  V ++   LC+ + S GG+
Sbjct: 274 IREARVEDSGKYLCIVNNSVGGE 296


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 291 IRDQHVVENASLLCLR 244
           ++D+ +VE  +LLC R
Sbjct: 13  VKDEKIVELEALLCRR 28


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
          protein.
          Length = 190

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 95 YFCAHDAVIHQSCKDE 48
          + C H+ V+H+  K E
Sbjct: 23 HHCHHNGVVHRDLKPE 38


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 6/31 (19%), Positives = 17/31 (54%)
 Frame = -2

Query: 288 RDQHVVENASLLCLRHFSFGGDPALCFGANP 196
           ++ +++   ++  +RHF   G+  + +  NP
Sbjct: 86  KEYNMLRTTAINVIRHFGIVGECNIQYALNP 116


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = +3

Query: 69  YDSIVRAEVSGAFCFLRVCYRIKGKDTIELPDVTALKAIKFIRDWL 206
           YD+ VR +  G    + V   ++    I   D+T      F + W+
Sbjct: 17  YDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSWV 62


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 199 IGSKAERWIAAEAKVTQT 252
           I +K E W+  EAK   T
Sbjct: 94  IDNKPEIWVLLEAKYDPT 111


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 199 IGSKAERWIAAEAKVTQT 252
           I +K E W+  EAK   T
Sbjct: 94  IDNKPEIWVLLEAKYDPT 111


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 6/21 (28%), Positives = 9/21 (42%)
 Frame = -3

Query: 116 KEAECTRYFCAHDAVIHQSCK 54
           K   C   FC +  ++H   K
Sbjct: 162 KSITCALQFCHNAGIVHADVK 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,347
Number of Sequences: 438
Number of extensions: 1412
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)