Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a23
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   7.2  
SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.2  
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac...    25   9.5  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   9.5  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +3

Query: 57  KTINKKSIDIFFYSDLYSAQCNANSV 134
           KT  KK  D    S L S+ CNANSV
Sbjct: 816 KTNTKKCRDNLNLSGLSSSTCNANSV 841


>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 107

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -2

Query: 590 NCIKVLQYMLLVVCNYNQFFYFHY----IPIIVIFYTSIIST 477
           N  + L Y    +C++ QFF  HY    + +++++Y S + +
Sbjct: 34  NVFRHLNYSTNSICSHYQFFGGHYESFELLVVIVYYFSHVGS 75


>SPBC21B10.12 |rec6||meiotic recombination protein
           Rec6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 27  IIQTAYRSHLKTINKKSIDIFF----YSDLYSAQCNANSVLYNIVGFFIRRS 170
           +I  A+  H+ +I  K   + F    YS +++A  NAN +  +I     R S
Sbjct: 11  LIHEAFLKHIVSILSKECPLSFQPSYYSKMFNAMSNANIIAGSISRILTRES 62


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
 Frame = +3

Query: 15  TIPLIIQTA--YRSHLKTINKKSIDIFFYSDLYSAQC------NANSVLYNIVGFFIRRS 170
           ++PL I ++  +++ LK I   S+      DL++ +       N  S+ Y I+GFF R +
Sbjct: 410 SLPLEITSSHSFKTFLKMIELSSLLQDILQDLFTVRALTRHSKNNRSISYQIIGFFTRLN 469

Query: 171 QL 176
            +
Sbjct: 470 SI 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,877
Number of Sequences: 5004
Number of extensions: 53212
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)