Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10a21
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 120 2e-27
01_06_1332 - 36379736-36379909,36380395-36380459,36380534-363806... 100 1e-21
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 35 0.081
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 31 0.75
01_05_0532 - 22992520-22992879,22993323-22993403,22993565-229936... 31 0.75
06_03_1137 + 27903012-27904196,27904330-27904542,27905775-279058... 29 4.0
03_01_0311 + 2453057-2454610 28 7.0
12_01_0473 + 3708770-3710026 28 9.3
09_06_0120 - 20973635-20974879 28 9.3
08_02_1354 - 26337628-26338540,26339638-26339981 28 9.3
05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676 28 9.3
01_06_1143 - 34862005-34862370,34862494-34862628,34862742-348629... 28 9.3
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 120 bits (288), Expect = 2e-27
Identities = 50/110 (45%), Positives = 80/110 (72%)
Frame = -2
Query: 432 AGDQSSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAP 253
AG ++LLS+ + ELV ++DP+ +LD EVE++L+ +A+DF+++ AC+LAKHR +
Sbjct: 156 AGGSGNRLLSKRSIHELVAQIDPSEKLDPEVEDVLIDIAEDFVESVATFACSLAKHRKSS 215
Query: 252 NVELRDVQLHLERQWNMWIPGFGNDELRPYKRAAVTEAHRQRMALIRKSI 103
+E +DV LH ER WN+ +PGF DE++ YK+ V + HR+R+ LI+KS+
Sbjct: 216 ILEAKDVLLHAERSWNITLPGFSGDEIKLYKKPHVNDIHRERLTLIKKSM 265
>01_06_1332 -
36379736-36379909,36380395-36380459,36380534-36380612,
36380794-36380868,36381106-36381609,36382046-36382246,
36383033-36383566
Length = 543
Score = 100 bits (239), Expect = 1e-21
Identities = 54/142 (38%), Positives = 85/142 (59%), Gaps = 7/142 (4%)
Frame = -2
Query: 564 QGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVG---QGGAGDQ----SSQLL 406
Q +Q + QSP++ S GS + G+Q G GG+ Q ++QLL
Sbjct: 346 QHILQQLQQQQQSPRI---SASGSQKSMNLTGSQPGTPLSGGTMTGGSASQGAEVTNQLL 402
Query: 405 SRPRLQELVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQL 226
+ ++Q+LV +VDP ++D EVE++LL++ADDFID+ AC LAKHR + +E +DV L
Sbjct: 403 GKRKIQDLVSQVDPLGKVDPEVEDLLLEIADDFIDSVTAFACTLAKHRKSSVLEAKDVLL 462
Query: 225 HLERQWNMWIPGFGNDELRPYK 160
HLE+ W++ +PGF ++ P +
Sbjct: 463 HLEKNWHLSVPGFLREDKNPQR 484
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 34.7 bits (76), Expect = 0.081
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Frame = -2
Query: 567 GQGAIQYVNNPMQSPQLQNTSIQ-GSPSQHSP---MGTQSQVAKVGQGGAGDQSSQLLSR 400
G G + +P SP Q S + G P+ P A GG GD+S + R
Sbjct: 445 GTGTSKETRSPALSPPPQAASFKSGLPTDAFPGRLADNADHAAAAAAGGGGDKSEETTPR 504
Query: 399 PRLQEL----VREVDPTVQLDEEVEEMLLQLADDFIDT 298
P+L+ L VR V + ++++ Q+ ++ I+T
Sbjct: 505 PKLKPLHWDKVRASSDRVMVWDQLKSSSFQVNEEMIET 542
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 31.5 bits (68), Expect = 0.75
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Frame = -2
Query: 522 QLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRP--RLQELVR-EVDPTVQL 352
+L G P H P + A GG GD Q P +L R DP +
Sbjct: 46 ELSEGEKDGKPDTHPPPAAAAAEAAADDGGGGDHQQQQQQPPPHQLSRFARINSDPRIVS 105
Query: 351 DEEVE 337
DEE E
Sbjct: 106 DEEEE 110
>01_05_0532 -
22992520-22992879,22993323-22993403,22993565-22993639,
22994140-22994301
Length = 225
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = -2
Query: 618 SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQ 439
S N A ++ P+ G+ GQ + + P S Q +NT + S QS G
Sbjct: 126 SANPFANSSIQPSAGSYGQATVGFAPRPSISDQSKNTIFSNALSSPVRRSLQSYHLTQGS 185
Query: 438 GGAG 427
G G
Sbjct: 186 GNGG 189
>06_03_1137 +
27903012-27904196,27904330-27904542,27905775-27905867,
27905940-27906008,27906412-27906612,27906688-27906834,
27907524-27907652,27909001-27909131,27909240-27909333
Length = 753
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = -2
Query: 429 GDQSSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPN 250
GD ++ + +L+EL R VDP ++ EE+ Q D + L+ A AK P
Sbjct: 619 GDDETEAVYNSKLEELKRLVDPIENRCKD-EEVRGQATRDLLKFILDHKTA-AKSLPTPE 676
Query: 249 VELRDVQLHLERQW 208
E D + QW
Sbjct: 677 QEAVDSECTKAEQW 690
>03_01_0311 + 2453057-2454610
Length = 517
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -2
Query: 498 GSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPT 361
G+P SP QS VA V +GG Q L +L+ L D T
Sbjct: 40 GAPPVSSPAARQSLVAVVSEGGEDSQRFLLEQEEQLRRLPSARDVT 85
>12_01_0473 + 3708770-3710026
Length = 418
Score = 27.9 bits (59), Expect = 9.3
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Frame = -2
Query: 645 SFVVLKV*MSNNSLAQAANMPTIGTVGQGA-IQYVNNPMQ--SPQLQNTSIQGSPSQHSP 475
+F +L V S+ + A+ P G G V P+Q S ++ G+ +
Sbjct: 300 AFWMLPVSASSAAAARPTEQPMWSFAGGGGGAATVQAPLQFMSTRVNYPGSAGAGMSDTN 359
Query: 474 MGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDEEVEE 334
+G + + +GGAGDQ Q +P + + R D D+ +E
Sbjct: 360 LGMLAALNAYNRGGAGDQQPQ--QQPEMDQQGRNDDDDDDGDDSGDE 404
>09_06_0120 - 20973635-20974879
Length = 414
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/89 (23%), Positives = 39/89 (43%)
Frame = -2
Query: 528 SPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLD 349
SP L G+P+ P G S A VG A + L + P L L+ P +
Sbjct: 18 SPSLPPNPAAGNPTSSPPQGNPSAAAAVGAAAAA--APTLTTSPSLLPLL----PPLPRA 71
Query: 348 EEVEEMLLQLADDFIDTTLNSACALAKHR 262
+ + +++ LA + + + + A ++ +R
Sbjct: 72 QALLQLISALASNLFELSPSRAAWISAYR 100
>08_02_1354 - 26337628-26338540,26339638-26339981
Length = 418
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -2
Query: 399 PRLQELVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAP 253
P LVR+V P +L E VE M + + CA+ K AP
Sbjct: 101 PHEHALVRQVQPDTRLIEIVELMKQGARRVLVGKNIKEGCAINKQPFAP 149
>05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676
Length = 365
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 621 MSNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHS 478
+ + A A I TVG G+ Y+NN P NT Q +P Q++
Sbjct: 149 LGDEDTAAAHLSQCIFTVGMGSNDYLNNYFM-PAFYNTGSQYTPEQYA 195
>01_06_1143 - 34862005-34862370,34862494-34862628,34862742-34862992,
34863192-34863243,34863408-34863694,34864030-34864182,
34865393-34865889,34866173-34866241,34867006-34867074,
34867486-34867560,34869341-34869412,34869499-34869570,
34869664-34869807,34870321-34870416,34870736-34870807,
34871081-34871152,34871683-34871830,34872609-34872708
Length = 909
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/91 (24%), Positives = 42/91 (46%)
Frame = -2
Query: 567 GQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQ 388
G+ ++ VN QS ++ + S SP +++A + D++ +RP +
Sbjct: 782 GKNIVREVNTAYQSGEIAGVIDERISSSSSPECV-ARLASLAVKCCKDETD---ARPSMA 837
Query: 387 ELVREVDPTVQLDEEVEEMLLQLADDFIDTT 295
++VRE+D E EE+L + D +T
Sbjct: 838 DVVRELDAIRSALPEGEELLPEYGDQSATST 868
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,274,043
Number of Sequences: 37544
Number of extensions: 327693
Number of successful extensions: 1038
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -