Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a18
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    31   0.20 
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    29   0.80 
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    29   0.80 
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    28   1.4  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    28   1.8  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   3.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   3.2  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    27   4.3  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    27   4.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   4.3  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    26   5.6  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    26   7.4  

>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 613 LSTSSSRLSFLINPYLFKFFVNICGNGVFKFRGCSLTVKF 732
           LS  ++R +  + PY F FFV+   N V K+R  ++ ++F
Sbjct: 281 LSIWAARYAAKVIPYFFAFFVSFISNNVTKWRCMAVALEF 320


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -2

Query: 587 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 384 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -2

Query: 587 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 380 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 752 NNFLSATNLTVNEQPLNLKTPFPQIFTK 669
           N+ LS+ N+  + QP+ ++ P P+I  K
Sbjct: 393 NSLLSSQNVEASSQPIKIRKPLPEIPNK 420


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -3

Query: 520 NYTSLKKKALRLQNIQRAWTN*QNLKTIMKMISNYD*FYSFFNNHTMGLFIFVKICED 347
           NY  LKK+  R +N Q  W+       +  +    D  YSF  N +  +   ++ CE+
Sbjct: 21  NYDKLKKEIKR-RNDQGGWSEEDESDFVELLEKELDKVYSFQKNKSAEVMERIRFCEE 77


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 563 IEKLHRDVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYEDDF 423
           I+K+ RD+   +  K  K  E   E ++Y   LD+     +  E+D+
Sbjct: 774 IKKIERDMQEWKHNKGSKMAELEKEFNQYKHKLDEFTPILEKSENDY 820


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 427 ISNYD*FYSFFNNHTMGLFI-FVKICED 347
           +SN +  Y FFNNH +G+   F  I  D
Sbjct: 856 LSNKELLYDFFNNHILGILAEFSNILND 883


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -2

Query: 626 EDVESCAVIAGYHNGTFLANMIEKLHRDVSRI--RFAKLHKFKEEGLEASEYTESLDKLA 453
           +D++  A   G  N T +  +  +L    S +  R A LH +  EG++  E+TE+   + 
Sbjct: 359 KDLKMSATFIG--NSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416

Query: 452 EFKDNYE 432
           +    Y+
Sbjct: 417 DLVSEYQ 423


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 671 KNLNKYGFIKNDNRLEDVESCAVIAGYHNGTFLANMIEK 555
           KNL+ YG     NRL+DV++   IA   +  F AN I++
Sbjct: 374 KNLDDYG---EGNRLDDVDAEDKIARKRSLKFYANQIDQ 409


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 794  VNSVKEMFELY-FQANNFLSATNLTVNEQPLNLKTPFPQIFTKNLNKY 654
            V ++ ++F L    AN F+    + V E  L L+  FP  F++ L KY
Sbjct: 1461 VRALIDLFHLLPNNANRFMDELLICVVEFSLRLQRTFPNYFSEPLLKY 1508


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/63 (20%), Positives = 30/63 (47%)
 Frame = -2

Query: 806 QHIGVNSVKEMFELYFQANNFLSATNLTVNEQPLNLKTPFPQIFTKNLNKYGFIKNDNRL 627
           QH  +NSVK +  L  + + ++   +  ++ +P+ +  P   +  K   K   I + + +
Sbjct: 173 QHTNINSVKRVLLLNRRDDGYIDLRHFIISTKPVGISRPIRHLL-KGEKKDSDIPDLHNV 231

Query: 626 EDV 618
            D+
Sbjct: 232 RDI 234


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
 Frame = -2

Query: 728 LTVNEQPLNLKTPFPQIFTKNL------NKYG---FIKNDNRLED 621
           LT+ E P+NL  P  +I  + L      ++YG   F+ NDN  ED
Sbjct: 128 LTILENPINLSQPKTRILLEVLKQHKLGHEYGKALFVLNDNYFED 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,339,090
Number of Sequences: 5004
Number of extensions: 69595
Number of successful extensions: 202
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)