Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a18
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0205 - 32347636-32347646,32347762-32347801,32347959-323480...    33   0.36 
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624...    33   0.36 
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469...    32   0.63 
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918...    31   0.84 
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257...    29   3.4  
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788...    28   7.8  
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    28   7.8  

>03_06_0205 -
           32347636-32347646,32347762-32347801,32347959-32348060,
           32348473-32348599,32348893-32350835,32351347-32351367
          Length = 747

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
 Frame = -2

Query: 782 KEMFELYFQANNFLSATNLTVNEQPLNLKTP-----FPQIFTKNLNKYGFIKNDNRLED- 621
           +E+F+  F+    L      V  +PL  K P       QI +KN+        ++ L++ 
Sbjct: 347 EELFK--FKREKGLLTLKNDVEFEPLRKKIPQIISRMDQIISKNIKMPSLCMTNDGLDER 404

Query: 620 -VESCAVIAGYHNGTFLANMIEKLHRDVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFK 444
            + +  + + Y+    L  ++    +DV  +        KE  ++ S   + L ++A+ K
Sbjct: 405 CISAKRIDSLYYENQHLRGLLADNMKDVKELSSQLSEASKEMSIQLSSEDDLLRQIAKIK 464

Query: 443 DNYED 429
           + YED
Sbjct: 465 EEYED 469


>03_02_0186 -
           6243487-6243799,6243892-6244400,6244495-6244557,
           6245482-6245681,6246125-6246519,6246776-6246888
          Length = 530

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -2

Query: 587 NGTFLANMIEKLHR--DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           N T +A +  ++ R  D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 461 NNTAVAEVFSRIDRKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 515


>09_04_0202 -
           15544498-15545037,15546043-15546449,15546874-15546977,
           15547580-15547788,15548092-15549428,15551680-15551941
          Length = 952

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = -2

Query: 635 NRLEDVESCAVIAGYHNGTFLANMIEKLHRDVSRIR 528
           N ++++       GYH+G+F+ N++E L+ + S+I+
Sbjct: 682 NSIDELRKSGENIGYHDGSFVKNLLEDLNFNTSKIK 717


>07_03_0994 +
           23190344-23190456,23191367-23191581,23191663-23191862,
           23192420-23192928,23193048-23193363
          Length = 450

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
 Frame = -2

Query: 587 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           N T +A +  ++ H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 380 NNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434


>03_05_0974 +
           29324025-29324117,29325064-29325298,29325385-29325755,
           29325864-29326520
          Length = 451

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -2

Query: 587 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           N T +  +  ++ H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 380 NSTSVVEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434


>11_02_0058 +
           7879859-7879951,7880844-7881078,7881165-7881535,
           7881648-7882304
          Length = 451

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -2

Query: 545 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 396 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434


>08_01_0321 +
           2872609-2873027,2873477-2873905,2874743-2874944,
           2875909-2875947,2876309-2876354,2877380-2877922,
           2878827-2880847,2880972-2881215,2881642-2881684,
           2881923-2881962,2883580-2883675,2883712-2883759,
           2883964-2884290
          Length = 1498

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -3

Query: 205 DVGHTISIIFHYLLRINHDSWILLV*TRQGTASHTRSSSATITCYHIPEQQCLIPLN-VN 29
           +V   IS +++ +  ++HD+   L+ TR G+   +  SS+T  C  I ++   +PL  + 
Sbjct: 592 EVATIISDVYN-MKPLSHDNSKELLYTRTGSEGKSLDSSSTEACDKILKKCAGVPLAIIT 650

Query: 28  VCSMIMKRS 2
           + S++  RS
Sbjct: 651 IASLLASRS 659


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,575,617
Number of Sequences: 37544
Number of extensions: 377106
Number of successful extensions: 787
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)