Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a18
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81523-9|CAB04246.2|  464|Caenorhabditis elegans Hypothetical pr...    31   1.00 
AB017191-1|BAA32601.1|  435|Caenorhabditis elegans alpha tubulin...    31   1.00 
Z99709-10|CAB16856.1|  448|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z81070-8|CAB03001.1|  449|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z37092-12|CAA85463.1|  448|Caenorhabditis elegans Hypothetical p...    30   1.7  
D16439-1|BAA03909.1|  449|Caenorhabditis elegans alpha-1 tubulin...    30   1.7  
D14965-1|BAA03610.1|  448|Caenorhabditis elegans alpha-2 tubulin...    30   1.7  
AL023832-2|CAA19476.1|  448|Caenorhabditis elegans Hypothetical ...    30   1.7  
AL023832-1|CAA19475.1|   85|Caenorhabditis elegans Hypothetical ...    30   1.7  
U65429-1|AAB48241.1|  450|Caenorhabditis elegans alpha-tubulin M...    29   3.0  
U40420-4|AAA81432.2|  456|Caenorhabditis elegans Tubulin, alpha ...    29   3.0  
D21134-1|BAA22203.1|  449|Caenorhabditis elegans alpha-3 tubulin...    29   3.0  
AF016685-1|AAG24144.2|  300|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF003387-1|AAB54263.2|  450|Caenorhabditis elegans Mechanosensor...    29   3.0  
AB017190-1|BAA32600.1|  450|Caenorhabditis elegans Alpha tubulin...    29   3.0  
Z81134-1|CAB03447.1|  444|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U42439-6|AAA83510.1|  266|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z78062-1|CAB01495.1|  447|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z48621-2|CAA88547.1|  536|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z46240-1|CAA86310.1|  444|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>Z81523-9|CAB04246.2|  464|Caenorhabditis elegans Hypothetical
           protein F32H2.9 protein.
          Length = 464

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = -2

Query: 587 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYEDDFEXX 414
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + +A  + +YE+  E  
Sbjct: 386 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEIGEDE 445

Query: 413 XXXXLFQQSHNG 378
               +  QS+ G
Sbjct: 446 LPDDIDDQSYRG 457


>AB017191-1|BAA32601.1|  435|Caenorhabditis elegans alpha tubulin
           (tba-6) protein.
          Length = 435

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = -2

Query: 587 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYEDDFEXX 414
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + +A  + +YE+  E  
Sbjct: 358 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEIGEDE 417

Query: 413 XXXXLFQQSHNG 378
               +  QS+ G
Sbjct: 418 LPDDIDDQSYRG 429


>Z99709-10|CAB16856.1|  448|Caenorhabditis elegans Hypothetical
           protein C47B2.3 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 545 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           D+   + A +H +  EG+E  E+TE+ + LA  + +YE+
Sbjct: 394 DLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432


>Z81070-8|CAB03001.1|  449|Caenorhabditis elegans Hypothetical
           protein F26E4.8 protein.
          Length = 449

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 545 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           D+   + A +H +  EG+E  E+TE+ + LA  + +YE+
Sbjct: 394 DLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432


>Z37092-12|CAA85463.1|  448|Caenorhabditis elegans Hypothetical
           protein F44F4.11 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 545 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           D+   + A +H +  EG+E  E+TE+ + LA  + +YE+
Sbjct: 394 DLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432


>D16439-1|BAA03909.1|  449|Caenorhabditis elegans alpha-1 tubulin
           protein.
          Length = 449

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 545 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           D+   + A +H +  EG+E  E+TE+ + LA  + +YE+
Sbjct: 394 DLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432


>D14965-1|BAA03610.1|  448|Caenorhabditis elegans alpha-2 tubulin
           protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 545 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           D+   + A +H +  EG+E  E+TE+ + LA  + +YE+
Sbjct: 394 DLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432


>AL023832-2|CAA19476.1|  448|Caenorhabditis elegans Hypothetical
           protein F44F4.11 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 545 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           D+   + A +H +  EG+E  E+TE+ + LA  + +YE+
Sbjct: 394 DLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432


>AL023832-1|CAA19475.1|   85|Caenorhabditis elegans Hypothetical
           protein Y19D2B.1 protein.
          Length = 85

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 545 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           D+   + A +H +  EG+E  E+TE+ + LA  + +YE+
Sbjct: 31  DLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 69


>U65429-1|AAB48241.1|  450|Caenorhabditis elegans alpha-tubulin
           MEC-12 protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -2

Query: 587 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434


>U40420-4|AAA81432.2|  456|Caenorhabditis elegans Tubulin, alpha
           protein 9 protein.
          Length = 456

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -2

Query: 587 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 385 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 439


>D21134-1|BAA22203.1|  449|Caenorhabditis elegans alpha-3 tubulin
           protein.
          Length = 449

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -2

Query: 587 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 379 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 433


>AF016685-1|AAG24144.2|  300|Caenorhabditis elegans Hypothetical
           protein F59E11.8 protein.
          Length = 300

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -2

Query: 623 DVESC---AVIAGYHNGTFLANMIEKLHRDVSRIRFAKLHKFKEEGLEASEYTESLDKLA 453
           D E C    V+  YH G  +   ++K    +  I    LH++  E  +A+ Y+  L K+ 
Sbjct: 199 DEELCYILCVLCFYHIGNKIGGSMQKTTERLLNILADNLHEYYVEQKDATRYSYRLTKIL 258

Query: 452 EFKDNYE 432
           +    Y+
Sbjct: 259 KISQQYK 265


>AF003387-1|AAB54263.2|  450|Caenorhabditis elegans Mechanosensory
           abnormality protein12 protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -2

Query: 587 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434


>AB017190-1|BAA32600.1|  450|Caenorhabditis elegans Alpha tubulin
           (tba-3) protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -2

Query: 587 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434


>Z81134-1|CAB03447.1|  444|Caenorhabditis elegans Hypothetical
           protein T28D6.2 protein.
          Length = 444

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -2

Query: 587 NGTFLANMIEKLHR--DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           N T +A   ++L    D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 375 NTTAIAEAWQRLDYKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 429


>U42439-6|AAA83510.1|  266|Caenorhabditis elegans Hypothetical
           protein F19C7.1 protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 637 SFLINPYLFKFFVNICGNGVFKFRGC 714
           S +++PY+   +VN+C NG   F GC
Sbjct: 59  SLIVSPYVIDSWVNVC-NGYAAFYGC 83


>Z78062-1|CAB01495.1|  447|Caenorhabditis elegans Hypothetical
           protein F16D3.1 protein.
          Length = 447

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = -2

Query: 545 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 429
           D+   + A +H +  EG+E  E++E+ + +A  + +YE+
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434


>Z48621-2|CAA88547.1|  536|Caenorhabditis elegans Hypothetical
           protein R07B1.3 protein.
          Length = 536

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = -2

Query: 716 EQPLNLKTPFPQIFTKNLNKYGFIKNDNRLEDVESCAVIAGYHNGTFLANMIEKLHRDVS 537
           E PL L      IF   +N YG+    N + ++++ A ++GY+N       I   + D +
Sbjct: 195 EDPL-LSVAHSGIFISLVNFYGYGSQLNYIPEMKTFAYLSGYNNSYDENYWINTGYNDFN 253

Query: 536 RIRFAK 519
           ++ F +
Sbjct: 254 KLGFVE 259


>Z46240-1|CAA86310.1|  444|Caenorhabditis elegans Hypothetical
           protein B0272.1 protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
 Frame = -2

Query: 722 VNEQPLNLKTPFPQIFTKNL-NKYGFIKNDNRLEDVESCAVIAGYHNGTFLANMIEKLHR 546
           V+EQ LN++      F + + N       D     V+  A   G  N T +  + +++  
Sbjct: 326 VDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGVKMAATFVG--NSTAIQELFKRISE 383

Query: 545 DVSRI--RFAKLHKFKEEGLEASEYTESLDKLAEFKDNYE 432
             + +  R A LH +  EG++  E+TE+   + +    Y+
Sbjct: 384 QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 423


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,441,855
Number of Sequences: 27780
Number of extensions: 394073
Number of successful extensions: 1100
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)