Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10a17
(340 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 0.59
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 26 1.4
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 26 1.8
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 25 2.4
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 3.2
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom... 25 3.2
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 25 3.2
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 3.2
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 25 4.2
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 24 5.5
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 24 5.5
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 24 7.3
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc... 24 7.3
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 24 7.3
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 23 9.6
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 23 9.6
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 27.5 bits (58), Expect = 0.59
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 148 TASVLSPYDASRLSPCSLDAHLFSLSDSDILST*VKHV 261
T SVL ++ S S C+L LF D+LS K V
Sbjct: 58 TTSVLKHHNVSNTSYCNLSPSLFIKFAEDVLSNLAKRV 95
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 26.2 bits (55), Expect = 1.4
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 266 LDTCLTQVDKMSESDKLKRCASSEQ-GDNLLASYGDKTDAVMXPXAFVPTVIINEKYDKD 90
L + D+ S + L+ AS DNLL S+ + A + A+ I EK++K+
Sbjct: 166 LGASIGNFDRKSAASFLRSFASRLNIHDNLLISFDHRNKAELVQLAYDDPYRITEKFEKN 225
Query: 89 V 87
+
Sbjct: 226 I 226
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 25.8 bits (54), Expect = 1.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 146 SQHPFYHRTTRADCLLVHWMRIFSVYPTPTSC 241
S +P TT + L ++W++ S + T +SC
Sbjct: 424 SHNPLASLTTDKNDLYINWLKSLSFFQTNSSC 455
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 25.4 bits (53), Expect = 2.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 214 FSLSDSDILST*VKHVSKDLSGLVW 288
+ + +SDI S KH+ D+S + W
Sbjct: 434 YPVDESDITSLFQKHIMSDISAIPW 458
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.0 bits (52), Expect = 3.2
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Frame = +1
Query: 139 GLITASVL--SPYDASR----LSPCSLDAHLFSLSDSDI 237
G I +++L PYD R + C LD+ L S++D D+
Sbjct: 659 GTIRSNILFGEPYDEERYFQIIKACCLDSDLNSMNDGDL 697
>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 25.0 bits (52), Expect = 3.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 139 GLITASVLSPYDASRLSPCSLDAHLFSLSDSDI 237
G + A +SP D ++LS ++ LFSLS ++
Sbjct: 16 GNMAAFDISPLDETKLSGSEKESFLFSLSRDNV 48
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 25.0 bits (52), Expect = 3.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 107 EKYDKDVETQAFENLKAVVCRVATPQPS 24
+KYDK+ Q+ N KA+ RV P S
Sbjct: 28 KKYDKNTNLQSNRNAKALEKRVQDPSIS 55
>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 330
Score = 25.0 bits (52), Expect = 3.2
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 276 GAGLVHDAYYNLHLL 320
G LVHDA YNLH L
Sbjct: 106 GDRLVHDARYNLHEL 120
>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 4.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 250 VKHVSKDLSGLVW 288
V HV+KD GLVW
Sbjct: 310 VAHVTKDAKGLVW 322
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.2 bits (50), Expect = 5.5
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 230 ESDKLKRCASSEQGDNLLASYGDKT-DAVMXPXAFVPTV 117
+ DK K C SS LAS KT DA + +VP +
Sbjct: 242 DKDKTKDCPSSNSNPFHLASSNVKTLDASLDQGEWVPRI 280
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 24.2 bits (50), Expect = 5.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -3
Query: 140 PXAFVPTVIINEKYDKDVETQAF 72
P P +++ ++Y KDV+ AF
Sbjct: 828 PEFMAPEILLEQQYSKDVDWWAF 850
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 23.8 bits (49), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 57 RLQVLEGLSFDIFVVFLVNNN 119
+LQ ++G+S D F V NN
Sbjct: 148 QLQAIDGISLDSVTTFQVTNN 168
>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 219
Score = 23.8 bits (49), Expect = 7.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 10 FYEQIDGCGVATRHTTAFK 66
++ I GCG+ ++TT+FK
Sbjct: 175 YFNYIVGCGLYGKNTTSFK 193
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 23.8 bits (49), Expect = 7.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 167 GDKTDAVMXPXAFVPTVIINEK 102
G K + + P F PTVIIN K
Sbjct: 371 GGKVASNLGPMYFEPTVIINAK 392
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 23.4 bits (48), Expect = 9.6
Identities = 21/59 (35%), Positives = 26/59 (44%)
Frame = +1
Query: 13 YEQIDGCGVATRHTTAFKFSKA*VSTSLSYFSLIITVGTNAXGLITASVLSPYDASRLS 189
YE I V T H K +A VS + S+ SLI + G S DASRL+
Sbjct: 348 YEDIITEQVLTAHENYIKQLEAEVSANKSFLSLINRYASLIEGKKELEA-SSNDASRLT 405
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 296 VMNQTSPDKSLDTCLTQVDKMSESDKLK 213
V N + ++ D ++DK++ESD LK
Sbjct: 78 VSNNGTENERSDELYVEIDKVAESDFLK 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,784
Number of Sequences: 5004
Number of extensions: 24537
Number of successful extensions: 72
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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