Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10a17
(340 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267... 40 7e-04
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180... 29 0.93
06_03_0188 - 17691582-17692241 29 1.2
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 28 2.1
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137... 27 3.8
08_02_0244 - 14717897-14718037,14719054-14719155,14719238-147193... 27 3.8
03_03_0234 + 15669463-15669773,15669866-15670046,15670133-156702... 27 5.0
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786... 27 5.0
01_06_0307 - 28361538-28361606,28361684-28361854,28361963-283620... 26 6.6
12_01_1061 + 10964571-10964927,10965393-10965425,10965865-109659... 26 8.7
09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612... 26 8.7
>03_02_0672 -
10325935-10326150,10326308-10326400,10326568-10326708,
10326828-10326893,10327099-10327359
Length = 258
Score = 39.5 bits (88), Expect = 7e-04
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -3
Query: 209 CASSEQGDNLLASYGDKTDAVMXPXAFVPTVIINEKYDKDVETQAFENLKAVVCRVATPQ 30
C E+G L YG +TDA+ P +VP V++ D + +EN +A +C+
Sbjct: 148 CYKGERGHQLSLKYGRQTDALQPPHKYVPWVVV----DGQPLYEDYENFEAYICKAYKGH 203
Query: 29 -PSIC 18
P +C
Sbjct: 204 PPKVC 208
>04_04_1242 -
32016553-32016857,32017628-32017784,32017871-32018089,
32018184-32018470,32018629-32019934,32020021-32020178,
32020250-32020335,32023106-32023173,32023297-32023340,
32023418-32023490,32023605-32023684,32023774-32023867,
32023981-32024151,32024463-32024557,32025049-32025128,
32025137-32025333,32025896-32026183
Length = 1235
Score = 29.1 bits (62), Expect = 0.93
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 199 LDAHLFSLSDSDILST*VKHVSKDLSGLVWF--MTHITISIFSV 324
LD L +S+ LS+ + + SGL+W +H+ IS+FSV
Sbjct: 115 LDLVLVEKDNSEDLSSTSRQIHSSGSGLIWLNEHSHLLISVFSV 158
>06_03_0188 - 17691582-17692241
Length = 219
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 120 RYY*REIRQRCRNSSLRELEGG 55
RY E R R RN LRE+EGG
Sbjct: 192 RYEREETRSRRRNQGLREIEGG 213
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 326 DTEKMEIVICVMNQTSPDKSLDTCLTQVD-KMSESD 222
+T+ E+V + S DK LD+ TQVD + SE D
Sbjct: 307 ETDGFEVVDTPLTTDSDDKRLDSTTTQVDERCSECD 342
>08_02_1426 +
27009720-27010787,27011846-27012517,27012999-27013793,
27014914-27014943,27018095-27019987
Length = 1485
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -3
Query: 311 EIVICVMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDN 183
E+V+ + Q +PD DTCL + + +++ E G N
Sbjct: 449 ELVMELARQLNPDNCEDTCLKKKEDSQDTEGSTHRKQQEDGQN 491
>08_02_0244 -
14717897-14718037,14719054-14719155,14719238-14719309,
14719369-14719480,14719640-14719707,14719801-14719908,
14720659-14721078,14722077-14722161,14723068-14723147,
14723336-14723413,14724074-14724213,14724324-14724738
Length = 606
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 142 LITASVLSPYDASRLSPCSLDAHLFSLSDSDILST*VKHVSKDLSGL 282
++ +V P ++ CS + + L DI+S + VS D+S L
Sbjct: 198 MVAVAVAQPQHGTQTVSCSKCRYQYELFSGDIMSIESEEVSMDISAL 244
>03_03_0234 +
15669463-15669773,15669866-15670046,15670133-15670297,
15670426-15670992
Length = 407
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 100 YFSLIITVGTNAXGLITASVLSPYDASRLSPCSLDAHLFSLSDSDIL 240
YF I GT+ GLITA + +P D R + D + F L + ++
Sbjct: 56 YFDCI--AGTSTGGLITAMLAAPGDHGRPLFAASDINRFYLDNGPLI 100
>01_06_0358 -
28677781-28677901,28678327-28678430,28678542-28678625,
28679221-28679265,28679523-28679594,28679721-28679759,
28679966-28680061,28680492-28680566,28681717-28681764,
28681888-28681971,28682141-28682341,28682394-28682561,
28683232-28683372,28683470-28683517,28683845-28684087,
28684184-28684297,28685134-28685163,28685361-28685951,
28686033-28686620,28686744-28686863,28687764-28687938,
28688397-28688562,28688653-28688755,28689227-28689319,
28690759-28690918,28691754-28691872
Length = 1275
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -3
Query: 320 EKMEIVICVMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGD 162
E + ++ + SP ++ + + QV+KM+ + + AS ++ L YGD
Sbjct: 272 ESKDTLVRQLRVLSPGEATEQIIRQVEKMTRNIERASRASKDEPSTLDMPYGD 324
>01_06_0307 -
28361538-28361606,28361684-28361854,28361963-28362027,
28362467-28362565,28363005-28363099,28363199-28363413,
28364394-28364735,28365505-28365645,28365774-28365945,
28366073-28366176,28366799-28366911,28367158-28367222,
28367564-28367691
Length = 592
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 138 RXHHSIRFITVRREQIVSLFTGCASFQFIRLRHLVYLS*ARVQRLVGAGLVHDAYYNLHL 317
R ++ I +R+E + L TG S IR+ H++ R Q ++ A + + + L
Sbjct: 73 RNRRELQLINMRKEMVQYLQTGQESIARIRVEHII-----REQNILAAYEIVELFCEFVL 127
Query: 318 LRV 326
RV
Sbjct: 128 ARV 130
>12_01_1061 +
10964571-10964927,10965393-10965425,10965865-10965909,
10966209-10966220
Length = 148
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 335 NXQDTEKMEIVICVMNQTSPDKSLDTCLTQV 243
N TEK IC+ Q S +K + + +T V
Sbjct: 109 NLDSTEKSPATICISKQRSIEKMVTSTITSV 139
>09_02_0235 +
6122145-6122206,6122408-6122417,6123515-6123549,
6124422-6124842,6124978-6125412
Length = 320
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 115 ITVGTNAXGLITASVLSPYDASRLSPCSLDAHLFSLSDSDIL 240
+TV G + ++ +P + + LD H+F +SD D+L
Sbjct: 151 LTVTCLIGGNLVRALYNPSIGATVMSAILDFHVFEISDFDVL 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,678,243
Number of Sequences: 37544
Number of extensions: 183577
Number of successful extensions: 538
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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