Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a17
         (340 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB049659-1|BAC98466.1|  250|Homo sapiens legumaturain protein.         46   2e-05
BC031020-1|AAH31020.1|  250|Homo sapiens interferon, gamma-induc...    45   7e-05
BC021136-1|AAH21136.1|  250|Homo sapiens interferon, gamma-induc...    45   7e-05
AF097362-1|AAF04618.1|  261|Homo sapiens gamma-interferon induci...    45   7e-05
AK123477-1|BAC85622.1|  148|Homo sapiens protein ( Homo sapiens ...    41   0.001
BC029126-1|AAH29126.1|  194|Homo sapiens lysozyme G-like 1 protein.    29   3.7  
AY358988-1|AAQ89347.1|  194|Homo sapiens SALW1939 protein.             29   3.7  
AC079447-2|AAX93256.1|  194|Homo sapiens unknown protein.              29   3.7  
BC130539-1|AAI30540.1|  734|Homo sapiens family with sequence si...    28   8.5  
BC130513-1|AAI30514.1|  734|Homo sapiens family with sequence si...    28   8.5  
AY457926-1|AAR20839.1|  734|Homo sapiens cancer associated nucle...    28   8.5  

>AB049659-1|BAC98466.1|  250|Homo sapiens legumaturain protein.
          Length = 250

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
 Frame = -3

Query: 305 VICVMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAVMXPXAFV 126
           ++C+      ++SL  CL         D +  CA  ++G  L+ +   +TDA+  P  +V
Sbjct: 146 IVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYV 205

Query: 125 PTVIINEKYDKDVETQAFENLKAVVCRV-ATPQPSIC 18
           P V +N K  +D +TQ    L A+VC++    +P +C
Sbjct: 206 PWVTVNGKPLED-QTQ----LLALVCQLYQGKKPDVC 237


>BC031020-1|AAH31020.1|  250|Homo sapiens interferon,
           gamma-inducible protein 30 protein.
          Length = 250

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
 Frame = -3

Query: 305 VICVMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAVMXPXAFV 126
           ++C+      ++SL  CL         D +  CA  ++G  L+ +   +TDA+  P  +V
Sbjct: 146 IVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYV 205

Query: 125 PTVIINEKYDKDVETQAFENLKAVVCRV-ATPQPSIC 18
           P V +N K  +D +TQ    L  +VC++    +P +C
Sbjct: 206 PWVTVNGKPLED-QTQ----LLTLVCQLYQGKKPDVC 237


>BC021136-1|AAH21136.1|  250|Homo sapiens interferon,
           gamma-inducible protein 30 protein.
          Length = 250

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
 Frame = -3

Query: 305 VICVMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAVMXPXAFV 126
           ++C+      ++SL  CL         D +  CA  ++G  L+ +   +TDA+  P  +V
Sbjct: 146 IVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYV 205

Query: 125 PTVIINEKYDKDVETQAFENLKAVVCRV-ATPQPSIC 18
           P V +N K  +D +TQ    L  +VC++    +P +C
Sbjct: 206 PWVTVNGKPLED-QTQ----LLTLVCQLYQGKKPDVC 237


>AF097362-1|AAF04618.1|  261|Homo sapiens gamma-interferon inducible
           lysosomal thiol reductase protein.
          Length = 261

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
 Frame = -3

Query: 305 VICVMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAVMXPXAFV 126
           ++C+      ++SL  CL         D +  CA  ++G  L+ +   +TDA+  P  +V
Sbjct: 157 IVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYV 216

Query: 125 PTVIINEKYDKDVETQAFENLKAVVCRV-ATPQPSIC 18
           P V +N K  +D +TQ    L  +VC++    +P +C
Sbjct: 217 PWVTVNGKPLED-QTQ----LLTLVCQLYQGKKPDVC 248


>AK123477-1|BAC85622.1|  148|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41483 fis, clone BRTHA2002808, highly  similar
           to GAMMA-INTERFERON-INDUCIBLE PROTEIN IP-30 PRECURSOR.
           ).
          Length = 148

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -3

Query: 305 VICVMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAVMXPXAFV 126
           ++C+      ++SL  CL         D +  CA  ++G  L+ +   +TDA+  P  +V
Sbjct: 56  IVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYV 115

Query: 125 PTVIIN 108
           P V +N
Sbjct: 116 PWVTVN 121


>BC029126-1|AAH29126.1|  194|Homo sapiens lysozyme G-like 1 protein.
          Length = 194

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 191 GDNLLASYGDKTDAVMXPXAFVPTVIINEKYDKDVETQAFENLKAVVCRVATPQP 27
           GD +L + GD+T  V  P +  PT  I+E             +K +  R  T  P
Sbjct: 96  GDKILVNMGDRTSMVQDPGSQAPTSWISESQVSQTTEVLTTRIKEIQRRFPTWTP 150


>AY358988-1|AAQ89347.1|  194|Homo sapiens SALW1939 protein.
          Length = 194

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 191 GDNLLASYGDKTDAVMXPXAFVPTVIINEKYDKDVETQAFENLKAVVCRVATPQP 27
           GD +L + GD+T  V  P +  PT  I+E             +K +  R  T  P
Sbjct: 96  GDKILVNMGDRTSMVQDPGSQAPTSWISESQVSQTTEVLTTRIKEIQRRFPTWTP 150


>AC079447-2|AAX93256.1|  194|Homo sapiens unknown protein.
          Length = 194

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 191 GDNLLASYGDKTDAVMXPXAFVPTVIINEKYDKDVETQAFENLKAVVCRVATPQP 27
           GD +L + GD+T  V  P +  PT  I+E             +K +  R  T  P
Sbjct: 96  GDKILVNMGDRTSMVQDPGSQAPTSWISESQVSQTTEVLTTRIKEIQRRFPTWTP 150


>BC130539-1|AAI30540.1|  734|Homo sapiens family with sequence
           similarity 111, member B protein.
          Length = 734

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 296 VMNQTSPDKSLDTCLTQVDKMSESDKLK 213
           VM QT  D  +D CL+ + K S + KLK
Sbjct: 30  VMKQTHADTPVDHCLSGIRKCSSTFKLK 57


>BC130513-1|AAI30514.1|  734|Homo sapiens family with sequence
           similarity 111, member B protein.
          Length = 734

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 296 VMNQTSPDKSLDTCLTQVDKMSESDKLK 213
           VM QT  D  +D CL+ + K S + KLK
Sbjct: 30  VMKQTHADTPVDHCLSGIRKCSSTFKLK 57


>AY457926-1|AAR20839.1|  734|Homo sapiens cancer associated
           nucleoprotein protein.
          Length = 734

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 296 VMNQTSPDKSLDTCLTQVDKMSESDKLK 213
           VM QT  D  +D CL+ + K S + KLK
Sbjct: 30  VMKQTHADTPVDHCLSGIRKCSSTFKLK 57


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,512,831
Number of Sequences: 237096
Number of extensions: 904059
Number of successful extensions: 2205
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2201
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1852524224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)