Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10a17
(340 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16622-5|ABC71836.1| 263|Caenorhabditis elegans Hypothetical pr... 55 1e-08
L16622-4|AAA27914.1| 323|Caenorhabditis elegans Hypothetical pr... 55 1e-08
Z37093-1|CAA85467.1| 264|Caenorhabditis elegans Hypothetical pr... 43 6e-05
Z37093-2|CAA85464.1| 218|Caenorhabditis elegans Hypothetical pr... 36 0.007
Z81068-8|CAB02988.1| 490|Caenorhabditis elegans Hypothetical pr... 29 0.85
AL034393-2|CAA22309.1| 220|Caenorhabditis elegans Hypothetical ... 28 1.5
U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical pr... 28 2.0
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho... 27 3.4
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho... 27 3.4
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 27 4.5
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 27 4.5
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 27 4.5
Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical pr... 26 6.0
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr... 26 6.0
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr... 26 6.0
AL110485-20|CAB60368.2| 600|Caenorhabditis elegans Hypothetical... 26 6.0
AF039053-10|AAC25884.2| 361|Caenorhabditis elegans Seven tm rec... 26 6.0
U58750-5|AAB00645.1| 299|Caenorhabditis elegans Hypothetical pr... 26 7.9
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein. 26 7.9
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo... 26 7.9
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo... 26 7.9
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo... 26 7.9
AL032630-6|CAA21562.1| 181|Caenorhabditis elegans Hypothetical ... 26 7.9
>L16622-5|ABC71836.1| 263|Caenorhabditis elegans Hypothetical
protein C02D5.2b protein.
Length = 263
Score = 54.8 bits (126), Expect = 1e-08
Identities = 31/96 (32%), Positives = 52/96 (54%)
Frame = -3
Query: 305 VICVMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAVMXPXAFV 126
V+C+ + S D+++ C+T+ + SE ++++ CAS +G LLA G KT ++ F+
Sbjct: 166 VLCMQGKYSLDEAMK-CVTE-NYPSEYERMRECASGTRGRRLLALSGQKTASLTPAIDFI 223
Query: 125 PTVIINEKYDKDVETQAFENLKAVVCRVATPQPSIC 18
P ++IN + D A +L VC P PS C
Sbjct: 224 PWIVINGSRNSD----ALYDLTQNVCEAMQPMPSAC 255
>L16622-4|AAA27914.1| 323|Caenorhabditis elegans Hypothetical
protein C02D5.2a protein.
Length = 323
Score = 54.8 bits (126), Expect = 1e-08
Identities = 31/96 (32%), Positives = 52/96 (54%)
Frame = -3
Query: 305 VICVMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAVMXPXAFV 126
V+C+ + S D+++ C+T+ + SE ++++ CAS +G LLA G KT ++ F+
Sbjct: 226 VLCMQGKYSLDEAMK-CVTE-NYPSEYERMRECASGTRGRRLLALSGQKTASLTPAIDFI 283
Query: 125 PTVIINEKYDKDVETQAFENLKAVVCRVATPQPSIC 18
P ++IN + D A +L VC P PS C
Sbjct: 284 PWIVINGSRNSD----ALYDLTQNVCEAMQPMPSAC 315
>Z37093-1|CAA85467.1| 264|Caenorhabditis elegans Hypothetical
protein ZK669.2 protein.
Length = 264
Score = 42.7 bits (96), Expect = 6e-05
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Frame = -3
Query: 314 MEIVICVMNQTSPDKSLDTCLTQVDKMSESDK--LKRCASSEQGDNLLASYGDKTDAVMX 141
+ IV C+ + ++D C+ + D+ + RCA S+ G L+ +G + V
Sbjct: 159 LPIVNCMQGKNKFSSAVDDCIVNFRPRPDLDENFMARCAQSQLGAKLMMQHGYRQKEVAS 218
Query: 140 PXAFVPTVIINEKYDKDVETQAFENLKAVVCRVA-TPQPSICS*NE 6
+VP ++IN + + E Q LK +VC+ + T + C E
Sbjct: 219 ELDWVPWILINGRRSQAAENQ----LKTIVCQFSETSKQEYCKTQE 260
>Z37093-2|CAA85464.1| 218|Caenorhabditis elegans Hypothetical
protein ZK669.3 protein.
Length = 218
Score = 35.9 bits (79), Expect = 0.007
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = -3
Query: 314 MEIVICVMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAVMXPX 135
ME+V C+ + + + + C K+ + K+ CA S G L + + +
Sbjct: 118 MEVVTCIQGKQNISMAAEVCFEGPTKLDRT-KMMECAESRHGRKLFSDQENIVAQMAPEM 176
Query: 134 AFVPTVIINEKYDKDVETQAFENLKAVVC-RVATPQPSIC 18
+ P ++IN K+ E E+L +C R P+P C
Sbjct: 177 DWAPWILINGTRYKEAE----EDLWQFLCDRFIDPRPIHC 212
>Z81068-8|CAB02988.1| 490|Caenorhabditis elegans Hypothetical
protein F25H5.7 protein.
Length = 490
Score = 29.1 bits (62), Expect = 0.85
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 266 LDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDK 159
+DT +TQ K ++ KR A ++QG+ L A +K
Sbjct: 450 VDTFMTQYKKHAQKKLAKRAAQNQQGEKLAAEEKEK 485
>AL034393-2|CAA22309.1| 220|Caenorhabditis elegans Hypothetical
protein Y18D10A.2 protein.
Length = 220
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = -3
Query: 299 CVMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAVMXPXAFVPT 120
C+ +T+ L CL + E ++ CA SE+G+ LL V A++P
Sbjct: 125 CIQGKTAYSAGLK-CLPDTE---EGKIVQNCAESEEGEYLLNDENSYRYNVAPHSAWLPW 180
Query: 119 VIINEKYDKDVE 84
+ +N + +++ E
Sbjct: 181 IQVNGERNRNAE 192
>U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical
protein F10E7.4 protein.
Length = 819
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 150 CDEXXRVRAHRYY*REIRQRCRNSSLRELEGGCVPRC 40
CDE RVR ++ E +RC + +L+E + + C
Sbjct: 574 CDEGVRVRTRLFFYSEHEKRCMHVNLQEKDTCVMQSC 610
>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4
homolog protein 1, isoformb protein.
Length = 1420
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 188 LLVHWMRIFSVYPTPTSCLLE 250
L+VHW+ I + P SCLL+
Sbjct: 504 LVVHWLEIRAATEPPDSCLLD 524
>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4
homolog protein 1, isoforma protein.
Length = 1418
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 188 LLVHWMRIFSVYPTPTSCLLE 250
L+VHW+ I + P SCLL+
Sbjct: 504 LVVHWLEIRAATEPPDSCLLD 524
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 339 PQXPG-HGEDGDCNMRHEPDQPRQVFGHVLNSS 244
P PG +G+ GDC M P +PR L+ S
Sbjct: 560 PGPPGPNGDHGDCGMPGAPGKPRSAGSDGLSGS 592
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 317 KMEIVICVMNQTSPDKSLDTCLTQVDKMSESDKLKRCASS 198
K +V C M S SL T +D+M +++ RC SS
Sbjct: 1537 KKHLVGCAMGVASKTSSLVTAFKDLDRMPDAE--SRCTSS 1574
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 317 KMEIVICVMNQTSPDKSLDTCLTQVDKMSESDKLKRCASS 198
K +V C M S SL T +D+M +++ RC SS
Sbjct: 1537 KKHLVGCAMGVASKTSSLVTAFKDLDRMPDAE--SRCTSS 1574
>Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical
protein C15C8.6 protein.
Length = 316
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +1
Query: 1 CYSFYEQIDGCGVATRHTTAFKFSKA*VSTSLSYFSLIITVGTNAXGLITASVLS 165
C+SF+ ++ C HTT +F+ + ++ L YF +I + A ++ ++ S
Sbjct: 144 CFSFFFTVNICA----HTTIRRFNPSELNWKLQYFEVISFIYLVAFIIVPTTLFS 194
>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
protein T19D12.4b protein.
Length = 1015
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 275 DKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAV 147
DK++ + D +S D K A S+ + +YGDK AV
Sbjct: 86 DKTVSAVFSLRDSVSADDVQKVLAGSKLVSQVETTYGDKATAV 128
>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
protein T19D12.4a protein.
Length = 1028
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 275 DKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAV 147
DK++ + D +S D K A S+ + +YGDK AV
Sbjct: 99 DKTVSAVFSLRDSVSADDVQKVLAGSKLVSQVETTYGDKATAV 141
>AL110485-20|CAB60368.2| 600|Caenorhabditis elegans Hypothetical
protein Y46G5A.25 protein.
Length = 600
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/71 (26%), Positives = 28/71 (39%)
Frame = -3
Query: 293 MNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDNLLASYGDKTDAVMXPXAFVPTVI 114
M+ ++PD S D+ D D K + D+L D + +PTV
Sbjct: 1 MSTSNPDNSTDS---PPDVSKTGDTYKSGTQTTNTDSLETKLSDDGPKKTVDLSLIPTVS 57
Query: 113 INEKYDKDVET 81
N + DKD T
Sbjct: 58 QNMEKDKDNTT 68
>AF039053-10|AAC25884.2| 361|Caenorhabditis elegans Seven tm
receptor protein 255 protein.
Length = 361
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 188 LLVHWMRIFSVYPTPTSCLLEL 253
L+V+W S++P P SCLL L
Sbjct: 72 LIVNWKE--SIFPKPISCLLNL 91
>U58750-5|AAB00645.1| 299|Caenorhabditis elegans Hypothetical
protein F55G1.9 protein.
Length = 299
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 119 VIINEKYDKDVETQAFENLKAVVC 48
+++N D+ETQ F +LK +VC
Sbjct: 234 MVLNSNSGFDIETQHFGSLKDMVC 257
>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
Length = 1379
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 107 EKYDKDVETQAFENLKAVVCRVATPQPS 24
E+ D VE +F+ + RV+TP+PS
Sbjct: 229 ERRDSVVEVSSFDQIPQSGLRVSTPKPS 256
>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform c protein.
Length = 1340
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 107 EKYDKDVETQAFENLKAVVCRVATPQPS 24
E+ D VE +F+ + RV+TP+PS
Sbjct: 193 ERRDSVVEVSSFDQIPQSGLRVSTPKPS 220
>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform a protein.
Length = 1376
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 107 EKYDKDVETQAFENLKAVVCRVATPQPS 24
E+ D VE +F+ + RV+TP+PS
Sbjct: 229 ERRDSVVEVSSFDQIPQSGLRVSTPKPS 256
>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform b protein.
Length = 1379
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 107 EKYDKDVETQAFENLKAVVCRVATPQPS 24
E+ D VE +F+ + RV+TP+PS
Sbjct: 229 ERRDSVVEVSSFDQIPQSGLRVSTPKPS 256
>AL032630-6|CAA21562.1| 181|Caenorhabditis elegans Hypothetical
protein Y62H9A.6 protein.
Length = 181
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 335 NXQDTEKMEIVICVMNQTSPDK 270
N D K++ V+CV TSPDK
Sbjct: 159 NNGDEVKIKTVVCVELSTSPDK 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,948,186
Number of Sequences: 27780
Number of extensions: 151858
Number of successful extensions: 475
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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