Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a16
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.06c |||mitochondrial ribosomal protein subunit L36|Schizo...    54   1e-08
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   2.5  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   2.5  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   3.4  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   4.5  
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    25   5.9  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    25   5.9  

>SPBC83.06c |||mitochondrial ribosomal protein subunit
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 59

 Score = 54.0 bits (124), Expect = 1e-08
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = -3

Query: 216 GIKIKGRVRRRCRSCYFVFRDERVYIMCSKFPRHK 112
           G K+K  V++RC SCYFV R  R+Y++C K PRHK
Sbjct: 21  GFKVKASVKKRCSSCYFVRRKGRLYVLCKKHPRHK 55


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 218 EICVTNGITGFTKFVTEG*EILFNIGSTFPPIKLLATLTNENSFCILPDVKLY 376
           + CV N  T  T F ++   I  +  S  PP   L TL + N    LP+++LY
Sbjct: 446 DTCVVNFSTPITNFFSK---IYKDNPSLNPPSWHLITLVHRNEKSSLPNLELY 495


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -3

Query: 417 FKCYLE*TILSIVQ*SFTSGKMQKLFSLVKVANSLIGGNVLPIL 286
           FK Y E T+   V+  +   +  + F LV++A+SL   +V+P++
Sbjct: 333 FKLYFELTLQVYVRNLYARLESPQQFVLVQIASSLTMMSVIPLI 376


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -3

Query: 360 GKMQKLFSLVKVANSLIGGNVLPILNRISQPSVTNFVKPVIPLVTQISGIKIKGRVRR 187
           G +  L +  +  +S IGG++    N I +    + V    PLVT  SG+   GR  R
Sbjct: 378 GSVDDLLNTRQFTSSPIGGSMPKGPNSIYKIPSASMVNLSSPLVTSPSGLNPTGRPSR 435


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 147 LSHLETQNNTTCNVSVRDL*FLYP 218
           +S LET NN T NV V    + YP
Sbjct: 409 ISFLETDNNVTTNVCVGKEWYRYP 432


>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 142 YYVFKVSKTQTNVNETKAT*HMDFDT 65
           Y VFK++ T+T +   K +   DFDT
Sbjct: 27  YVVFKMNDTKTEIVVEKKSTDKDFDT 52


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -3

Query: 309 GGNVLPILNRISQPSVTNFVKPVIPLVTQISGIKI 205
           GG    +L  +  P +++ +   IPL  ++SG ++
Sbjct: 136 GGQDPAVLELVESPRLSSLLADYIPLCARVSGTRV 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,096
Number of Sequences: 5004
Number of extensions: 38020
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)