Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10a16
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0083 + 28256844-28258760                                         29   1.9  
02_04_0580 + 24065830-24065967,24066163-24067425                       28   3.3  
09_03_0069 - 12056342-12056521,12057274-12057540                       28   4.4  
04_04_0392 + 24891478-24891612,24891875-24893092                       28   4.4  
11_08_0082 + 28239159-28241237                                         27   5.8  
01_07_0387 - 43224718-43224810,43224990-43225070,43225676-432257...    27   7.7  

>11_08_0083 + 28256844-28258760
          Length = 638

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = +2

Query: 197 RPLIFIPEICVTNGITGFTKFVTEG*EILFNIGSTFPPIKLLATLTNENSFCILPDVKLY 376
           RP +F+   CV NG  G   FVT   E LF   + F  +       N++   I  D+   
Sbjct: 495 RPHVFVQ--CVVNGAYGAPFFVTRFREALFFYSAHFDMLDATIPRDNDDRLLIERDMLGR 552

Query: 377 CTIDSI 394
           C ++ I
Sbjct: 553 CALNVI 558


>02_04_0580 + 24065830-24065967,24066163-24067425
          Length = 466

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 200 VAYGDVAGRVILCFEMREFILCVQSFQDTN 111
           +AYGD+  RV+ CF   EF + V  F   N
Sbjct: 349 LAYGDLVKRVLRCFGPLEFSVAVTIFGGRN 378


>09_03_0069 - 12056342-12056521,12057274-12057540
          Length = 148

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 60  SLVSKSMCYVALVSLTFVCVL 122
           +L+S   C+ AL+SL FVC L
Sbjct: 8   ALISTLCCFTALLSLAFVCFL 28


>04_04_0392 + 24891478-24891612,24891875-24893092
          Length = 450

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 200 VAYGDVAGRVILCFEMREFILCVQSF 123
           +AYGD+  RV+ CF   EF + V  F
Sbjct: 330 LAYGDLVKRVLRCFGPSEFSVAVTIF 355


>11_08_0082 + 28239159-28241237
          Length = 692

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +2

Query: 197 RPLIFIPEICVTNGITGFTKFVTEG*EILFNIGSTFPPIKLLATLTNENSFCILPDV 367
           RP +F+   CV NG  G   F+T   E LF   S F  +       N+    I  D+
Sbjct: 544 RPHVFVQ--CVVNGAYGAPFFLTRFRETLFFYSSQFDMLDATIPRDNDERLLIERDI 598


>01_07_0387 -
           43224718-43224810,43224990-43225070,43225676-43225735,
           43227129-43227208,43227285-43227336,43227412-43227549,
           43227627-43227944,43229381-43229438,43229520-43229629,
           43230041-43230280
          Length = 409

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -3

Query: 177 SCYFVFRDERVYIMCSKFPRHKQMSMKPKPHNTWILTQASQS 52
           SC+F  R  R  ++     R+  ++++P+PH    +  +S S
Sbjct: 20  SCFFSARSPRQTLLLPPLARNPTLTIQPRPHPFRNINSSSSS 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,542,876
Number of Sequences: 37544
Number of extensions: 214985
Number of successful extensions: 410
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)